From 4f14ac95b7975ffcfa79834d4d5166597ca3add1 Mon Sep 17 00:00:00 2001
From: brunocontrerasmoreira <bcontreras@ebi.ac.uk>
Date: Wed, 2 Jan 2019 15:22:22 +0000
Subject: [PATCH] Added minimap preliminary tests.

---
 TODO.txt                      |   1 +
 manual_get_homologues-est.pdf | Bin 761623 -> 761623 bytes
 2 files changed, 1 insertion(+)

diff --git a/TODO.txt b/TODO.txt
index 3661603..939dd46 100644
--- a/TODO.txt
+++ b/TODO.txt
@@ -21,6 +21,7 @@ Current list of ideas to improve/update GET_HOMOLOGUES:
 * Script to produce VCF/MFA after parsing sorted DNA clusters 
 
 * Add alternatives to NCBI blastn: minimap2 simulating bitscore & E-value
+  Local tests show minimap alignments are shorter: https://bioinfoperl.blogspot.com/2018/08/minimap2-vs-blastn.html
 
 * Add taxon names to tmp/blast.bpo file 
 
diff --git a/manual_get_homologues-est.pdf b/manual_get_homologues-est.pdf
index 89609af28118a483168a350fab92453d41e207c5..bda065030f4b268ca9e575d3b118c8223ff55ea7 100644
GIT binary patch
delta 145
zcmbQfPjC7@y@nRX7N!>F7M2#)7Pc1l7LFFq7OpMaTV^Pk8d{o~M`?2D`{t*(B$lKq
zXt-Dz85mj`7#bKEf+eS4o5B6Y+11e4&CJ5Y$<WZ$$=txy!ob|s(#gQY$<)=v!r0N=
Q!cM`4kdp1Jv$%y=0sDz2h5!Hn

delta 145
zcmbQfPjC7@y@nRX7N!>F7M2#)7Pc1l7LFFq7OpMaTV^Pkm>L+GL}_yA`{t*(B$lKq
zXt-Dz85mj`7#bKEf+eS4o5B6Y*~HDr#l_Xw)zZz}#K7Fp(9PA%*~G%l)Y#O`*}~b<
Q*iONQkdp1Jv$%y=0Sx#j4gdfE