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Commits on Dec 9, 2022

• reorder dependencies and shift the packages MuMIn & methods to 'Suggests' instead of 'Imports' (only used in vignettes, not part of package functions)

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• update extdata after walkthrough with rachel

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Commits on Dec 8, 2022

• add ganalytics

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• update feature details

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• update news and info about the three types of diversity, change doi to always show latest

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Commits on Dec 7, 2022

• add zenodo doi

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• only include alpha diversity for build/apply models, regenerate site

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• revise beta diversity section of vignette build-models

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• remove of group level records in the generation of community matrix, as this was previously missed

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• minor edits to build-models and process-animal vignettes

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• Merge branch 'main' of https://github.com/ecological-cities/biodivercity

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• Resolve conflict in L142 when glue() was removed

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Commits on Dec 6, 2022

• regenerate pkgdown site

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• debug error where amended veg raster had no data inside UGS area

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• XP's updates from previous commit

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• Update data saved in extdata to build-models_beta-diversity.Rdata which will contain birds (previously beta_model_data), bird_com and landscape (previously beta_model_variables)

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• Update vignettes to move processing of animal data to create bird_com to process-animal.Rmd.

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• reduce package dependencies

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• regenerate pkgdown site

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• address spelling error highlighted by R CMD CHECK, amend to present tense phrased as suggestions for analyses (rather than a statement of past fact)

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• change pkg version no, address R CMD CHECK notes for DESCRIPTION file

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Commits on Dec 5, 2022

• Update build model (beta):

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Commits on Nov 7, 2022

• regenerate pkgdown site

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• add code walkthrough for citywide benchmarking in use-cases vignette

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Commits on Nov 3, 2022

• add example code for use-cases vignette, amend minor errors, regenerate pkgdown site

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• change named objects for example osm data, since names are similar for manually mapped data. Process.Rmd has been changed

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Commits on Nov 2, 2022

• amend authorship info, regenerate pkgdown site

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Commits on Oct 28, 2022

• address spell check using R CMD CHECK and regenerate pkgdown

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• regenerate pkgdown website

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• revise standard_sr() to pass R-CMD-CHECK and to replace town/round/priority with area/preiod/taxon.

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• revise build-models and apply-models vignette to ensure that all data are available and follows logical flow from process-landscape and process-animal vignettes. Completed for Local (Alpha) diversi…

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• add graphical visualisation of manually mapped data in process-landscape vignette (transfer over from apply-models vignette)

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• add dependency for graphics::hist() function in threshold_otsu() function

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• change citywide monitoring output to 500m pixel resolution for birds (previously 1km for odonates), remove cross validation results, and other changes to documentation

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• remove unused vignettes

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