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setup.py
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setup.py
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#!python3
# -*- coding: utf-8 -*-
from setuptools import setup
from Cython.Build import cythonize
# Define package info
with open('README.md', 'r') as fh:
long_description = fh.read()
setup(
name='pycoQC',
description='PycoQC computes metrics and generates interactive QC plots for Oxford Nanopore technologies sequencing data',
version='3.0.0',
long_description=long_description,
long_description_content_type='text/markdown',
url='https://github.com/a-slide/pycoQC',
author='Adrien Leger & Tommaso Leonardi & Marc-Olivier Duceppe',
author_email='aleg@ebi.ac.uk',
license='GPLv3',
python_requires='>=3.6',
classifiers=[
'Development Status :: 3 - Alpha',
'Intended Audience :: Science/Research',
'Topic :: Scientific/Engineering :: Bio-Informatics',
'License :: OSI Approved :: GNU General Public License v3 (GPLv3)',
'Programming Language :: Python :: 3'],
install_requires=[
'numpy>=1.24',
'scipy>=1.10',
'pandas>=2.0',
'plotly==5.16.1',
'jinja2>=3.1',
'h5py>=3.10',
'tqdm>=4.66',
'pysam>=0.22',
'Cython>=3.0'],
packages=['pycoQC'],
package_dir={'pycoQC': 'pycoQC'},
package_data={'pycoQC': ['templates/*']},
entry_points={
'console_scripts': [
'pycoQC=pycoQC.__main__:main_pycoQC',
'Fast5_to_seq_summary=pycoQC.__main__:main_Fast5_to_seq_summary',
'Fastq_to_seq_summary=pycoQC.__main__:main_Fastq_to_seq_summary',
'Pod5_to_seq_summary=pycoQC.__main__:main_Pod5_to_seq_summary',
'Bam_to_seq_summary=pycoQC.__main__:main_Bam_to_seq_summary',
'Barcode_split=pycoQC.__main__:main_Barcode_split']},
ext_modules=cythonize("functions.pyx")
)