Update ClickOnce targets to reference publishing deps.json from the IntermediateDepsFilePath. The file gets copied to the PublishDepsFilePath during the copy targets which is too late for ClickOnce's manifest generation task.

Author: Sujit Nayak

src/Tasks/Microsoft.NET.Build.Tasks/targets/Microsoft.NET.ClickOnce.targets

@@ -59,7 +59,7 @@ Copyright (c) .NET Foundation. All rights reserved.
     <!-- Get correct deps json files based on _UseBuildDependencyFile -->
     <ItemGroup>
       <ProjectDepsFilesForClickOnce Condition="'$(_UseBuildDependencyFile)' == 'true'" Include="$(ProjectDepsFilePath)"/>
-      <ProjectDepsFilesForClickOnce Condition="'$(_UseBuildDependencyFile)' != 'true'" Include="$(PublishDepsFilePath)"/>
+      <ProjectDepsFilesForClickOnce Condition="'$(_UseBuildDependencyFile)' != 'true'" Include="$(IntermediateDepsFilePath)"/>
     </ItemGroup>
 
     <!-- Add runtimeconfig and deps json file to item group that's included in files for clickonce publishing -->