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Stabilize the LR test #4446

Merged
merged 3 commits into from
Nov 11, 2019
Merged

Stabilize the LR test #4446

merged 3 commits into from
Nov 11, 2019

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bpstark
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@bpstark bpstark commented Nov 6, 2019

Found issue with how we were using random for our
ImageClassificationTrainer. This caused instability in our unit test, as
we were not able to control the random seed. Modified the code to now
use the same random object throughout, the trainer, thus allowing us to
control the seed and therefor have predictable output.

@bpstark bpstark requested review from a team as code owners November 6, 2019 19:34
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codecov bot commented Nov 6, 2019

Codecov Report

Merging #4446 into master will decrease coverage by 0.01%.
The diff coverage is 100%.

@@            Coverage Diff             @@
##           master    #4446      +/-   ##
==========================================
- Coverage   74.72%   74.71%   -0.02%     
==========================================
  Files         906      906              
  Lines      159288   159285       -3     
  Branches    17145    17145              
==========================================
- Hits       119029   119003      -26     
- Misses      35452    35475      +23     
  Partials     4807     4807
Flag Coverage Δ
#Debug 74.71% <100%> (-0.02%) ⬇️
#production 70.07% <100%> (-0.03%) ⬇️
#test 90.12% <100%> (ø) ⬆️
Impacted Files Coverage Δ
.../Microsoft.ML.Vision/ImageClassificationTrainer.cs 92.18% <100%> (ø) ⬆️
test/Microsoft.ML.AutoML.Tests/AutoFitTests.cs 82.26% <100%> (ø) ⬆️
...cenariosWithDirectInstantiation/TensorflowTests.cs 91.35% <100%> (+0.2%) ⬆️
...c/Microsoft.ML.FastTree/Utils/ThreadTaskManager.cs 79.48% <0%> (-20.52%) ⬇️
src/Microsoft.ML.AutoML/Sweepers/ISweeper.cs 59.49% <0%> (-7.6%) ⬇️
src/Microsoft.ML.AutoML/Sweepers/Parameters.cs 77.96% <0%> (-5.09%) ⬇️
src/Microsoft.ML.Maml/MAML.cs 24.75% <0%> (-1.46%) ⬇️
...soft.ML.Data/DataLoadSave/Text/TextLoaderCursor.cs 84.9% <0%> (-0.21%) ⬇️
...L.AutoML/TrainerExtensions/TrainerExtensionUtil.cs 86.89% <0%> (+1.74%) ⬆️
#Closed

@codemzs
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codemzs commented Nov 7, 2019

@bpstark The polynomial LR test still seems to be failing, see below snapshot from test results.

image
#Resolved

Found issue with how we were using random for our
ImageClassificationTrainer. This caused instability in our unit test, as
we were not able to control the random seed. Modified the code to now
use the same random object throughout, the trainer, thus allowing us to
control the seed and therefor have predictable output.
@@ -937,7 +937,7 @@ private int GetNumSamples(string path)
metrics.Train.LearningRate = learningRate;
// Update train state.
trainstate.CurrentEpoch = epoch;
using (var cursor = trainingSet.GetRowCursor(trainingSet.Schema.ToArray(), new Random()))
using (var cursor = trainingSet.GetRowCursor(trainingSet.Schema.ToArray(), Host.Rand))
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trainingSet.GetRowCursor(trainingSet.Schema.ToArray(), Host.Rand)) [](start = 36, length = 66)

You don't need to pass anything, look at the code for ShuffleRowTransformer:

        if (_forceShuffle || _forceShuffleSource)
            _forceShuffleSeed = options.ForceShuffleSeed ?? Host.Rand.NextSigned(); #Resolved

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While you are correct that if we do not pass anything then it should still be stable, RowShuffling uses host to create a seed to then create a new random, this seems unnecessary, as we would be creating a new object when we can just use an existing random which is more efficient.


In reply to: 344297118 [](ancestors = 344297118)

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I discussed offline with @bpstark and we agreed that we should not be passing in Host.Rand object (as I suggested earlier) because it is not thread safe. As I explained, the shuffling transformer code will create a seed from Host.Rand object (that it has access internally) to create an local/internal Rand object and this will ensure stability and also remove concerns around thread safety. #Resolved

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codemzs commented Nov 8, 2019

@bpstark Thanks! Can you please confirm samples run without any change in accuracy? Otherwise the change looks great. #Resolved

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bpstark commented Nov 8, 2019

Actually accuracy did change, it improved, it just happens that this random number is slightly better than the previously used random number, and since the dataset is so small it made an actual impact.


In reply to: 551956033 [](ancestors = 551956033)

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:shipit:

@bpstark bpstark merged commit bcdac55 into dotnet:master Nov 11, 2019
Lynx1820 added a commit to Lynx1820/machinelearning that referenced this pull request Nov 14, 2019
commit a5e274ef8869576190bbb794360a5f56d998b470
Merge: b7db4fa d7f9996
Author: Keren Fuentes <dkeren@seas.upenn.edu>
Date:   Thu Nov 14 14:51:21 2019 -0800

    Merge branch 'onnx_bin_classifiers' of https://github.com/Lynx1820/machinelearning into onnx_bin_classifiers

commit b7db4fa
Author: Harish Kulkarni <harishsk@users.noreply.github.com>
Date:   Thu Nov 14 17:41:12 2019 +0000

    Added onnx export support for KeyToValueMappingTransformer (dotnet#4455)

commit f3e0f6b
Author: Eric Erhardt <eric.erhardt@microsoft.com>
Date:   Thu Nov 14 07:22:12 2019 -0600

    Fix a flaky Extensions.ML test. (dotnet#4458)

    * Fix a flaky Extensions.ML test.

    Make the reload model tests more resistant to timing changes.

    * PR feedback.

commit c1e190a
Author: Harish Kulkarni <harishsk@users.noreply.github.com>
Date:   Thu Nov 14 05:24:14 2019 +0000

    Added onnx export support for OptionalColumnTransform  (dotnet#4454)

    * Initial work for adding onnx export support for OptionalColumnTransform

    * Implemented support for optional initializers in OnnxTranformer to support OptionalColumnTransform

    * Fixed handling of double values and non-long numeric types

    * Removed redundant line

    * Updated review comment

commit f96761b
Author: Harish Kulkarni <harishsk@users.noreply.github.com>
Date:   Thu Nov 14 03:17:12 2019 +0000

    Fixed model saving and loading of OneVersusAllTrainer to include SoftMax (dotnet#4472)

    * Fixed model saving and loading of OneVersusAllTrainer to include SoftMax

    * Modified existing test to include SoftMax option

    * Modified test to verify both cases: when UseSoftmax is true and false

commit d45cc8a
Author: Jake <31937616+JakeRadMSFT@users.noreply.github.com>
Date:   Wed Nov 13 17:26:49 2019 -0800

    Add InternalsVisibleTo in AutoML and CodeGenerator for the assembly Microsoft.ML.ModelBuilder.AutoMLService.Gpu (dotnet#4474)

commit 5e83e23
Author: Eric Erhardt <eric.erhardt@microsoft.com>
Date:   Wed Nov 13 16:09:05 2019 -0600

    CpuMathNative assembly is not getting copied when using packages.config. (dotnet#4465)

    When we refactored CpuMath to support netcoreapp3.0, we broke the packages.config support to copy the native assembly. This fixes it again by copying the file from the correct location.

    Fix dotnet#93

commit 693250b
Author: Harish Kulkarni <harishsk@users.noreply.github.com>
Date:   Wed Nov 13 21:58:07 2019 +0000

    Added onnx export support for WordTokenizingTransformer and NgramExtractingTransformer (dotnet#4451)

    * Added onnx export support for string related transforms

    * Updated baseline test files

    A large portion of this commit is upgrading the baseline test files. The rest of the fixes deal with build breaks resulting from the upgrade of ORT version.

    * Fixed bugs in ValueToKeyMappingTransformer and added additional tests

commit 5910910
Author: Antonio Velázquez <38739674+antoniovs1029@users.noreply.github.com>
Date:   Mon Nov 11 17:19:39 2019 -0800

    Fixes dotnet#4292 about using PFI with BPT and CMPB (dotnet#4306)

    *Changes in PredictionTransformer.cs and Calibrator.cs to fix the problem of the create methods not being called, to make CMP load its internal calibrator and predictor first so to assign the correct paramaters types and runtimes, and added a PredictionTransformerLoadTypeAttribute so that the binary prediction transformer knows what type to assign when loading a CMP as its internal model.
    *Added a working sample for using PFI with BPT and CMPB while loading a model from disk. This is based entirely in the original sample.
    *Added file CalibratedModelParametersTests.cs with tests that the CMPs modified in this PR are now being correctly loaded from disk.
    *Changed a couple of tests in LbfgsTests.cs that failed because they used casts that now return 'null'.

commit bcdac55
Author: Brian Stark <54910472+bpstark@users.noreply.github.com>
Date:   Mon Nov 11 13:42:42 2019 -0800

    Stabilize the LR test (dotnet#4446)

    * Stabilize the LR test

    Found issue with how we were using random for our
    ImageClassificationTrainer. This caused instability in our unit test, as
    we were not able to control the random seed. Modified the code to now
    use the same random object throughout, the trainer, thus allowing us to
    control the seed and therefor have predictable output.

commit d7f9996
Author: Keren Fuentes <dkeren@seas.upenn.edu>
Date:   Mon Nov 11 11:33:17 2019 -0800

    workaround Scores

commit 7fba31c
Merge: 93388b6 c96d690
Author: Keren Fuentes <dkeren@seas.upenn.edu>
Date:   Mon Nov 11 11:25:28 2019 -0800

    merging changes

commit 93388b6
Author: Keren Fuentes <dkeren@seas.upenn.edu>
Date:   Mon Nov 11 11:19:59 2019 -0800

    Added extraction of score column before node creation

commit ea71828
Author: Keren Fuentes <dkeren@seas.upenn.edu>
Date:   Fri Nov 8 15:53:11 2019 -0800

    fix for binary classification trainers export to onnx

commit 6fad293
Author: Keren Fuentes <dkeren@seas.upenn.edu>
Date:   Thu Oct 31 15:26:43 2019 -0700

    Revert "draft regression test"

    This reverts commit 1ad45c995516b9d39fc05aca855ce2abe96c407b.

commit 83c1c80
Author: Keren Fuentes <dkeren@seas.upenn.edu>
Date:   Thu Oct 31 15:24:23 2019 -0700

    draft regression test

commit 8884161
Author: frank-dong-ms <55860649+frank-dong-ms@users.noreply.github.com>
Date:   Fri Nov 8 20:20:53 2019 -0800

    nightly build pipeline (dotnet#4444)

    * nightly build pipeline

commit c96d690
Author: Keren Fuentes <dkeren@seas.upenn.edu>
Date:   Fri Nov 8 15:53:11 2019 -0800

    fix for binary classification trainers export to onnx

commit 8100364
Author: Keren Fuentes <dkeren@seas.upenn.edu>
Date:   Thu Oct 31 15:26:43 2019 -0700

    Revert "draft regression test"

    This reverts commit 1ad45c995516b9d39fc05aca855ce2abe96c407b.

commit 81381e2
Author: Keren Fuentes <dkeren@seas.upenn.edu>
Date:   Thu Oct 31 15:24:23 2019 -0700

    draft regression test
@bpstark bpstark deleted the stabilizeTest branch November 18, 2019 19:31
Lynx1820 added a commit to Lynx1820/machinelearning that referenced this pull request Dec 2, 2019
commit a5e274ef8869576190bbb794360a5f56d998b470
Merge: b7db4fa d7f9996
Author: Keren Fuentes <dkeren@seas.upenn.edu>
Date:   Thu Nov 14 14:51:21 2019 -0800

    Merge branch 'onnx_bin_classifiers' of https://github.com/Lynx1820/machinelearning into onnx_bin_classifiers

commit b7db4fa
Author: Harish Kulkarni <harishsk@users.noreply.github.com>
Date:   Thu Nov 14 17:41:12 2019 +0000

    Added onnx export support for KeyToValueMappingTransformer (dotnet#4455)

commit f3e0f6b
Author: Eric Erhardt <eric.erhardt@microsoft.com>
Date:   Thu Nov 14 07:22:12 2019 -0600

    Fix a flaky Extensions.ML test. (dotnet#4458)

    * Fix a flaky Extensions.ML test.

    Make the reload model tests more resistant to timing changes.

    * PR feedback.

commit c1e190a
Author: Harish Kulkarni <harishsk@users.noreply.github.com>
Date:   Thu Nov 14 05:24:14 2019 +0000

    Added onnx export support for OptionalColumnTransform  (dotnet#4454)

    * Initial work for adding onnx export support for OptionalColumnTransform

    * Implemented support for optional initializers in OnnxTranformer to support OptionalColumnTransform

    * Fixed handling of double values and non-long numeric types

    * Removed redundant line

    * Updated review comment

commit f96761b
Author: Harish Kulkarni <harishsk@users.noreply.github.com>
Date:   Thu Nov 14 03:17:12 2019 +0000

    Fixed model saving and loading of OneVersusAllTrainer to include SoftMax (dotnet#4472)

    * Fixed model saving and loading of OneVersusAllTrainer to include SoftMax

    * Modified existing test to include SoftMax option

    * Modified test to verify both cases: when UseSoftmax is true and false

commit d45cc8a
Author: Jake <31937616+JakeRadMSFT@users.noreply.github.com>
Date:   Wed Nov 13 17:26:49 2019 -0800

    Add InternalsVisibleTo in AutoML and CodeGenerator for the assembly Microsoft.ML.ModelBuilder.AutoMLService.Gpu (dotnet#4474)

commit 5e83e23
Author: Eric Erhardt <eric.erhardt@microsoft.com>
Date:   Wed Nov 13 16:09:05 2019 -0600

    CpuMathNative assembly is not getting copied when using packages.config. (dotnet#4465)

    When we refactored CpuMath to support netcoreapp3.0, we broke the packages.config support to copy the native assembly. This fixes it again by copying the file from the correct location.

    Fix dotnet#93

commit 693250b
Author: Harish Kulkarni <harishsk@users.noreply.github.com>
Date:   Wed Nov 13 21:58:07 2019 +0000

    Added onnx export support for WordTokenizingTransformer and NgramExtractingTransformer (dotnet#4451)

    * Added onnx export support for string related transforms

    * Updated baseline test files

    A large portion of this commit is upgrading the baseline test files. The rest of the fixes deal with build breaks resulting from the upgrade of ORT version.

    * Fixed bugs in ValueToKeyMappingTransformer and added additional tests

commit 5910910
Author: Antonio Velázquez <38739674+antoniovs1029@users.noreply.github.com>
Date:   Mon Nov 11 17:19:39 2019 -0800

    Fixes dotnet#4292 about using PFI with BPT and CMPB (dotnet#4306)

    *Changes in PredictionTransformer.cs and Calibrator.cs to fix the problem of the create methods not being called, to make CMP load its internal calibrator and predictor first so to assign the correct paramaters types and runtimes, and added a PredictionTransformerLoadTypeAttribute so that the binary prediction transformer knows what type to assign when loading a CMP as its internal model.
    *Added a working sample for using PFI with BPT and CMPB while loading a model from disk. This is based entirely in the original sample.
    *Added file CalibratedModelParametersTests.cs with tests that the CMPs modified in this PR are now being correctly loaded from disk.
    *Changed a couple of tests in LbfgsTests.cs that failed because they used casts that now return 'null'.

commit bcdac55
Author: Brian Stark <54910472+bpstark@users.noreply.github.com>
Date:   Mon Nov 11 13:42:42 2019 -0800

    Stabilize the LR test (dotnet#4446)

    * Stabilize the LR test

    Found issue with how we were using random for our
    ImageClassificationTrainer. This caused instability in our unit test, as
    we were not able to control the random seed. Modified the code to now
    use the same random object throughout, the trainer, thus allowing us to
    control the seed and therefor have predictable output.

commit d7f9996
Author: Keren Fuentes <dkeren@seas.upenn.edu>
Date:   Mon Nov 11 11:33:17 2019 -0800

    workaround Scores

commit 7fba31c
Merge: 93388b6 c96d690
Author: Keren Fuentes <dkeren@seas.upenn.edu>
Date:   Mon Nov 11 11:25:28 2019 -0800

    merging changes

commit 93388b6
Author: Keren Fuentes <dkeren@seas.upenn.edu>
Date:   Mon Nov 11 11:19:59 2019 -0800

    Added extraction of score column before node creation

commit ea71828
Author: Keren Fuentes <dkeren@seas.upenn.edu>
Date:   Fri Nov 8 15:53:11 2019 -0800

    fix for binary classification trainers export to onnx

commit 6fad293
Author: Keren Fuentes <dkeren@seas.upenn.edu>
Date:   Thu Oct 31 15:26:43 2019 -0700

    Revert "draft regression test"

    This reverts commit 1ad45c995516b9d39fc05aca855ce2abe96c407b.

commit 83c1c80
Author: Keren Fuentes <dkeren@seas.upenn.edu>
Date:   Thu Oct 31 15:24:23 2019 -0700

    draft regression test

commit 8884161
Author: frank-dong-ms <55860649+frank-dong-ms@users.noreply.github.com>
Date:   Fri Nov 8 20:20:53 2019 -0800

    nightly build pipeline (dotnet#4444)

    * nightly build pipeline

commit c96d690
Author: Keren Fuentes <dkeren@seas.upenn.edu>
Date:   Fri Nov 8 15:53:11 2019 -0800

    fix for binary classification trainers export to onnx

commit 8100364
Author: Keren Fuentes <dkeren@seas.upenn.edu>
Date:   Thu Oct 31 15:26:43 2019 -0700

    Revert "draft regression test"

    This reverts commit 1ad45c995516b9d39fc05aca855ce2abe96c407b.

commit 81381e2
Author: Keren Fuentes <dkeren@seas.upenn.edu>
Date:   Thu Oct 31 15:24:23 2019 -0700

    draft regression test
Lynx1820 added a commit that referenced this pull request Dec 2, 2019
* Squashed commit of the following:

commit a5e274ef8869576190bbb794360a5f56d998b470
Merge: b7db4fa d7f9996
Author: Keren Fuentes <dkeren@seas.upenn.edu>
Date:   Thu Nov 14 14:51:21 2019 -0800

    Merge branch 'onnx_bin_classifiers' of https://github.com/Lynx1820/machinelearning into onnx_bin_classifiers

commit b7db4fa
Author: Harish Kulkarni <harishsk@users.noreply.github.com>
Date:   Thu Nov 14 17:41:12 2019 +0000

    Added onnx export support for KeyToValueMappingTransformer (#4455)

commit f3e0f6b
Author: Eric Erhardt <eric.erhardt@microsoft.com>
Date:   Thu Nov 14 07:22:12 2019 -0600

    Fix a flaky Extensions.ML test. (#4458)

    * Fix a flaky Extensions.ML test.

    Make the reload model tests more resistant to timing changes.

    * PR feedback.

commit c1e190a
Author: Harish Kulkarni <harishsk@users.noreply.github.com>
Date:   Thu Nov 14 05:24:14 2019 +0000

    Added onnx export support for OptionalColumnTransform  (#4454)

    * Initial work for adding onnx export support for OptionalColumnTransform

    * Implemented support for optional initializers in OnnxTranformer to support OptionalColumnTransform

    * Fixed handling of double values and non-long numeric types

    * Removed redundant line

    * Updated review comment

commit f96761b
Author: Harish Kulkarni <harishsk@users.noreply.github.com>
Date:   Thu Nov 14 03:17:12 2019 +0000

    Fixed model saving and loading of OneVersusAllTrainer to include SoftMax (#4472)

    * Fixed model saving and loading of OneVersusAllTrainer to include SoftMax

    * Modified existing test to include SoftMax option

    * Modified test to verify both cases: when UseSoftmax is true and false

commit d45cc8a
Author: Jake <31937616+JakeRadMSFT@users.noreply.github.com>
Date:   Wed Nov 13 17:26:49 2019 -0800

    Add InternalsVisibleTo in AutoML and CodeGenerator for the assembly Microsoft.ML.ModelBuilder.AutoMLService.Gpu (#4474)

commit 5e83e23
Author: Eric Erhardt <eric.erhardt@microsoft.com>
Date:   Wed Nov 13 16:09:05 2019 -0600

    CpuMathNative assembly is not getting copied when using packages.config. (#4465)

    When we refactored CpuMath to support netcoreapp3.0, we broke the packages.config support to copy the native assembly. This fixes it again by copying the file from the correct location.

    Fix #93

commit 693250b
Author: Harish Kulkarni <harishsk@users.noreply.github.com>
Date:   Wed Nov 13 21:58:07 2019 +0000

    Added onnx export support for WordTokenizingTransformer and NgramExtractingTransformer (#4451)

    * Added onnx export support for string related transforms

    * Updated baseline test files

    A large portion of this commit is upgrading the baseline test files. The rest of the fixes deal with build breaks resulting from the upgrade of ORT version.

    * Fixed bugs in ValueToKeyMappingTransformer and added additional tests

commit 5910910
Author: Antonio Velázquez <38739674+antoniovs1029@users.noreply.github.com>
Date:   Mon Nov 11 17:19:39 2019 -0800

    Fixes #4292 about using PFI with BPT and CMPB (#4306)

    *Changes in PredictionTransformer.cs and Calibrator.cs to fix the problem of the create methods not being called, to make CMP load its internal calibrator and predictor first so to assign the correct paramaters types and runtimes, and added a PredictionTransformerLoadTypeAttribute so that the binary prediction transformer knows what type to assign when loading a CMP as its internal model.
    *Added a working sample for using PFI with BPT and CMPB while loading a model from disk. This is based entirely in the original sample.
    *Added file CalibratedModelParametersTests.cs with tests that the CMPs modified in this PR are now being correctly loaded from disk.
    *Changed a couple of tests in LbfgsTests.cs that failed because they used casts that now return 'null'.

commit bcdac55
Author: Brian Stark <54910472+bpstark@users.noreply.github.com>
Date:   Mon Nov 11 13:42:42 2019 -0800

    Stabilize the LR test (#4446)

    * Stabilize the LR test

    Found issue with how we were using random for our
    ImageClassificationTrainer. This caused instability in our unit test, as
    we were not able to control the random seed. Modified the code to now
    use the same random object throughout, the trainer, thus allowing us to
    control the seed and therefor have predictable output.

commit d7f9996
Author: Keren Fuentes <dkeren@seas.upenn.edu>
Date:   Mon Nov 11 11:33:17 2019 -0800

    workaround Scores

commit 7fba31c
Merge: 93388b6 c96d690
Author: Keren Fuentes <dkeren@seas.upenn.edu>
Date:   Mon Nov 11 11:25:28 2019 -0800

    merging changes

commit 93388b6
Author: Keren Fuentes <dkeren@seas.upenn.edu>
Date:   Mon Nov 11 11:19:59 2019 -0800

    Added extraction of score column before node creation

commit ea71828
Author: Keren Fuentes <dkeren@seas.upenn.edu>
Date:   Fri Nov 8 15:53:11 2019 -0800

    fix for binary classification trainers export to onnx

commit 6fad293
Author: Keren Fuentes <dkeren@seas.upenn.edu>
Date:   Thu Oct 31 15:26:43 2019 -0700

    Revert "draft regression test"

    This reverts commit 1ad45c995516b9d39fc05aca855ce2abe96c407b.

commit 83c1c80
Author: Keren Fuentes <dkeren@seas.upenn.edu>
Date:   Thu Oct 31 15:24:23 2019 -0700

    draft regression test

commit 8884161
Author: frank-dong-ms <55860649+frank-dong-ms@users.noreply.github.com>
Date:   Fri Nov 8 20:20:53 2019 -0800

    nightly build pipeline (#4444)

    * nightly build pipeline

commit c96d690
Author: Keren Fuentes <dkeren@seas.upenn.edu>
Date:   Fri Nov 8 15:53:11 2019 -0800

    fix for binary classification trainers export to onnx

commit 8100364
Author: Keren Fuentes <dkeren@seas.upenn.edu>
Date:   Thu Oct 31 15:26:43 2019 -0700

    Revert "draft regression test"

    This reverts commit 1ad45c995516b9d39fc05aca855ce2abe96c407b.

commit 81381e2
Author: Keren Fuentes <dkeren@seas.upenn.edu>
Date:   Thu Oct 31 15:24:23 2019 -0700

    draft regression test

* update name and remove some dependency code

* baseline file changes

* Refactored function
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