Initial commit.

Author: dohlee

.github/workflows/python-publish.yml

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+# This workflow will upload a Python Package using Twine when a release is created
+# For more information see: https://help.github.com/en/actions/language-and-framework-guides/using-python-with-github-actions#publishing-to-package-registries
+
+# This workflow uses actions that are not certified by GitHub.
+# They are provided by a third-party and are governed by
+# separate terms of service, privacy policy, and support
+# documentation.
+
+name: Upload Python Package
+
+on:
+  release:
+    types: [published]
+
+jobs:
+  deploy:
+
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v2
+    - name: Set up Python
+      uses: actions/setup-python@v2
+      with:
+        python-version: '3.x'
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        pip install build
+    - name: Build package
+      run: python -m build
+    - name: Publish package
+      uses: pypa/gh-action-pypi-publish@27b31702a0e7fc50959f5ad993c78deac1bdfc29
+      with:
+        user: __token__
+        password: ${{ secrets.PYPI_API_TOKEN }}

.gitignore

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+spliceai_train_code/
+
+data/
+note/.ipynb_checkpoints/
+
+*.egg-info/
+
+**/__pycache__/
+wandb/

README.md

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+# tranception-pytorch

setup.py

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+from setuptools import setup, find_packages
+
+setup(
+  name = 'tranception-pytorch',
+  packages = find_packages(exclude=[]),
+  include_package_data = True,
+  version = '0.0.1',
+  license='MIT',
+  description = 'Tranception - Pytorch',
+  author = 'Dohoon Lee',
+  author_email = 'dohlee.bioinfo@gmail.com',
+  long_description_content_type = 'text/markdown',
+  url = 'https://github.com/dohlee/tranception-pytorch',
+  keywords = [
+    'artificial intelligence',
+    'genomics',
+    'variant effect prediction',
+    'protein fitness'
+  ],
+  install_requires=[
+    'einops>=0.3',
+    'numpy',
+    'torch>=1.6',
+  ],
+  classifiers=[
+    'Development Status :: 4 - Beta',
+    'Intended Audience :: Developers',
+    'Topic :: Scientific/Engineering :: Artificial Intelligence',
+    'License :: OSI Approved :: MIT License',
+    'Programming Language :: Python :: 3.9',
+  ],
+)