config.yaml

# General
port_table: "data/portTable.csv"
sra_file: "data/SraRunTable/SraRunTable.csv"

## Do you want to use an annotation table to match whether or not the Reciprocal Best Hit matches the known gene?
## If yes: anno_table points to a file with the gene annotations: 
# anno_table: "output/recBlastDBPrep/hg38_geneAcc_hashTable.tsv"
## If no: place an empty string
anno_table: ""

## For verbosity, add more V's. Special points to whomever inputs 50 V's.
verbose: "v"

## Query and reverse types should be either "prot" or "dna" for now
### Note: this was the state-of-the-art for BLAT v35; its possible that a future BLAT update implemenets the missing types of search (eg: dnax to dnax)
query_type: "prot"
reverse_type: "dna"

## Also need to know the nature of the imput query
forward_db_type: "dna"
reverse_db_type: "dna"

## BLAT is best-implemented; BLAST has also been implemented, but hasn't been thoroughly tested
forward_algo: "blat"
reverse_algo: "blat"