dock6

Trent Balius (document based on DOCK3.7 by Ryan G. Coleman Teague Sterling)

DOCK6 is a molcular docking program written in C++.

How To Fork for Development

Create an account on github.com
Go to https://github.com/settings/ssh and paste your public key in the box
Go to https://github.com/docking-org/DOCK
Click "Fork" to create your own working copy
On your development machine and set the the trunk as upstream:

git clone git@github.com:[YOUR_USERNAME_HERE]/dock6.git dock6

cd dock6

git remote add upstream git@github.com:docking-org/dock6.git
After making some changes, save them locally on your machine:

git commit -m "I changed test/file-abc" test/file-abc

or

git commit -a -m "I changed all the files"
After a series of changes are ready to push remotely

git push
If these changes should be added to the master DOCK branch
- Go to https://github.com:[YOUR_USERNAME_HERE]/dock6.git
- Click "Pull Request" in the upper-right corner of the file listing
- Click "Click to create a pull request for this comparison"
- Add any additional notes you may want
- Press "Send pull request"
If you are an administrator in the primary DOCK repository, click "Merge pull request" , add any comments wanted, then click "Confirm merge" and the changes will be added to the DOCK trunk
To update your fork with the trunk

git pull upstream master git push

test: Tools and data for testing dockenv functionality

Note: This is just a stub of the usage documentation. Consult the wiki linked above for more information.

You will need to set the environmental variable DOCKBASE to the root repository path.

For example usage look the test directory.