check_merge.chk

#
# Definition of sets
# ID	[2]id	[3]tab-separated file names
# SN, Summary numbers
# SN	[2]id	[3]key	[4]value
SN	0	number of samples:	2
SN	0	number of records:	18
SN	0	number of no-ALTs:	1
SN	0	number of SNPs:	5
SN	0	number of MNPs:	1
SN	0	number of indels:	9
SN	0	number of others:	2
SN	0	number of multiallelic sites:	6
SN	0	number of multiallelic SNP sites:	1
# # TSTV, transition/transversions:
# TSTV	[2]id	[3]ts	[4]tv	[5]ts/tv	[6]ts (1st ALT)	[7]tv (1st ALT)	[8]ts/tv (1st ALT)
TSTV	0	3	2	1.50	3	1	3.00
# Sis, Singleton stats
# SiS	[2]id	[3]allele count	[4]number of SNPs	[5]number of transitions	[6]number of transversions	[7]number of indels	[8]repeat-consistent	[9]repeat-inconsistent	[10]not applicable
SiS	0	1	3	1	2	0	0	0	0
# AF, Stats by non-reference allele frequency
# AF	[2]id	[3]allele frequency	[4]number of SNPs	[5]number of transitions	[6]number of transversions	[7]number of indels	[8]repeat-consistent	[9]repeat-inconsistent	[10]not applicable
AF	0	0.000000	3	1	2	2	0	0	2
AF	0	49.000000	0	0	0	12	0	0	12
AF	0	74.000000	1	1	0	0	0	0	0
AF	0	99.000000	1	1	0	0	0	0	0
# IDD, InDel distribution
# IDD	[2]id	[3]length (deletions negative)	[4]count
IDD	0	-10	1
IDD	0	-8	1
IDD	0	-4	3
IDD	0	-3	4
IDD	0	-2	1
IDD	0	-1	2
IDD	0	1	1
IDD	0	2	1
# ST, Substitution types
# ST	[2]id	[3]type	[4]count
ST	0	A>C	0
ST	0	A>G	0
ST	0	A>T	0
ST	0	C>A	0
ST	0	C>G	0
ST	0	C>T	0
ST	0	G>A	3
ST	0	G>C	1
ST	0	G>T	1
ST	0	T>A	0
ST	0	T>C	0
ST	0	T>G	0
# DP, Depth distribution
# DP	[2]id	[3]bin	[4]number of genotypes	[5]fraction of genotypes (%)	[6]number of sites	[7]fraction of sites (%)
DP	0	60	0	0.000000	1	33.333333
DP	0	62	0	0.000000	2	66.666667
# QUAL, Stats by quality
# QUAL	[2]id	[3]Quality	[4]number of SNPs	[5]number of transitions (1st ALT)	[6]number of transversions (1st ALT)	[7]number of indels
QUAL	0	12	1	0	1	1
QUAL	0	45	0	0	0	1
QUAL	0	59	2	1	0	3
QUAL	0	60	1	1	0	0
QUAL	0	61	0	0	0	1
QUAL	0	79	0	0	0	1
QUAL	0	82	0	0	0	1
QUAL	0	90	1	1	0	0
QUAL	0	342	0	0	0	1