-
Notifications
You must be signed in to change notification settings - Fork 0
Expand file tree
/
Copy pathsuperstep_both_impl.hpp
More file actions
549 lines (377 loc) · 15.9 KB
/
Copy pathsuperstep_both_impl.hpp
File metadata and controls
549 lines (377 loc) · 15.9 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
/**
* \file superstep.hpp
* \brief Header file for Superstep class
* \author Luca Di Mauro
*/
#ifndef SUPERSTEP_HPP
#define SUPERSTEP_HPP
#include <workerThread.hpp>
#include <barrier.hpp>
#include <lockableVector.hpp>
#include <uTimer.hpp>
#include <list>
#include <numeric>
#include <algorithm>
#include <mutex>
#ifdef MAP_OF_SEQ_MODEL
std::mutex outputMutex;
#define PRINT(msg) {\
std::unique_lock<std::mutex> lock (outputMutex);\
std::cout << msg << std::endl;\
}
template<typename T>
class Superstep {
public:
/* Describes the data-type necessary to perform the comunication phase:
* The i-th position of the vector contains elements which will be sent to activity i
* of next superstep (length of this vector should be equal to parallelism degree)
*/
using CommunicationProtocols = std::vector<std::vector<T>>;
// Defines the type of a general activity
using ActivityFunction = std::function<void (int, int, int, int, std::vector<T>&)>;
/* Type of function called at the end of superstep to decide whether contiue execution or not
* Arguments:
* index The index of current superstep
* outputVectors (LockableVectors resulting at the end of communication phase
* Returned values:
* -1 Termination reached
* -2 Next superstep
* n>=0 Termination not reached. 'n' is the index of the next superstep
*/
using AtExitFunction = std::function<int (std::vector<LockableVector<T>>&)>;
const int NEXT_STEP_FLAG = -2; // Going to next step during computation
const int EOC_FLAG = -1; // End of computation
private:
// Holds the activity submitted by the user
std::vector<std::pair<ActivityFunction, std::function<CommunicationProtocols (int, int, int, int,
std::vector<T>&)>>> activitiesFunctions;
Barrier startBarrier;
Barrier compPhaseBarrier;
Barrier commPhaseBarrier;
std::mutex outputVectorsMutex;
AtExitFunction atExitF;
// Function executed by a generic WorkerThread
void workerFunction (int index, std::vector<T> &inputVector, std::vector<LockableVector<T>> &outputVectors);
void subWorkerFunction (int idx, int subWIdx, int start, int end,
std::vector<T> &inputVector, std::vector<LockableVector<T>> &outputItems);
static std::atomic_int nextVectorToLock;
public:
Superstep ();
~Superstep ();
int addActivity (ActivityFunction fun, CommunicationProtocols protocol);
int addActivity (ActivityFunction fun, std::function<CommunicationProtocols (int, int, int, int, std::vector<T>&)> protocol);
/* Method to execute this current superstep. It requries a vector of workers on which the activity will be run,
* a vector containing vector which hold input elements for that worker and a LockableVector on which will be
* saved output elements
*/
int runStep (int q,
std::vector<WorkerThread> &workers,
std::vector<std::vector<T>> &inputVectors,
std::vector<LockableVector<T>> &outputVectors);
int getActivitiesNumber ();
void setAtExitFunction (AtExitFunction atExit);
};
template<typename T>
std::atomic_int Superstep<T>::nextVectorToLock;
/* ========== ========== ========== ========== ========== */
/* ========== ========== ========== ========== ========== */
template<typename T>
Superstep<T>::Superstep () : startBarrier (0), compPhaseBarrier(0), commPhaseBarrier(0) {
atExitF = AtExitFunction ([&] (std::vector<LockableVector<T>> &outputItems) {
return NEXT_STEP_FLAG;
});
}
template<typename T>
Superstep<T>::~Superstep () {}
template<typename T>
int Superstep<T>::addActivity (ActivityFunction fun, CommunicationProtocols protocols) {
auto protoFun = std::function<Superstep<T>::CommunicationProtocols (std::vector<int> &)> ([protocols] (std::vector<int> els) {
// FIXME In this case 'protocols' array contains the indexes of array --> convert it into elements
return protocols;
});
auto element = std::make_pair<ActivityFunction, std::function<CommunicationProtocols (std::vector<T>&)>>
(std::move(fun), std::move(protoFun));
activitiesFunctions.emplace_back (std::move(element));
return activitiesFunctions.size()-1;
}
template<typename T>
int Superstep<T>::addActivity (ActivityFunction fun, std::function<CommunicationProtocols (int, int, int, int,
std::vector<T>&)> protocol) {
auto element = std::make_pair<ActivityFunction, std::function<CommunicationProtocols (int, int, int, int, std::vector<T>&)>>
(std::move(fun), std::move(protocol));
activitiesFunctions.emplace_back (std::move(element));
return activitiesFunctions.size()-1;
}
template<typename T>
int Superstep<T>::getActivitiesNumber () {
return activitiesFunctions.size();
}
template<typename T>
void Superstep<T>::setAtExitFunction (AtExitFunction atExitFun) {
atExitF = atExitFun;
}
template<typename T>
int Superstep<T>::runStep (int q,
std::vector<WorkerThread> &workers,
std::vector<std::vector<T>> &inputVectors,
std::vector<LockableVector<T>> &outputVectors) {
// TOOD Add checks on q
if (workers.size () < activitiesFunctions.size()*q) {
throw std::runtime_error ("Mismatching between number of workers and number of activities! (#workers < #activities*q)");
}
if (inputVectors.size() < activitiesFunctions.size())
throw std::runtime_error ("Mismatching between number of activities and number of input queues! (#activities > #queues)");
//PRINT ("Starting superstep with p: " << activitiesFunctions.size() << " and q: " << q);
// Resetting bariers
commPhaseBarrier.reset (activitiesFunctions.size()*q);
compPhaseBarrier.reset (activitiesFunctions.size()*q);
startBarrier.reset (1);
// Setting up worker threads
for (size_t i=0; i<activitiesFunctions.size(); i++) {
int k = inputVectors[i].size()/q;
for (int j=0; j<q; j++) {
// Bind packaged task to arguments
auto lambdaFunction = [&] (int index, int subwWIdx, int start, int end, std::vector<T> &inputItems, std::vector<LockableVector<T>> &outputItems) {
subWorkerFunction (index, subwWIdx, start, end, inputItems, outputItems);
};
auto startIdx = (j*k);
auto endIdx = ((j+1)*k);
auto boundedFunction = std::bind (lambdaFunction, i, j, startIdx, endIdx, std::ref(inputVectors[i]), std::ref(outputVectors));
auto packagedTask = std::packaged_task<void()> (boundedFunction);
// Assign created packaged_task to a worker
workers[(i*q)+j].assignActivity (std::move(packagedTask));
}
}
// Starting workers and waiting for their completion
startBarrier.decreaseBarrier ();
commPhaseBarrier.waitForFinish ();
return atExitF (outputVectors);
}
template<typename T>
void Superstep<T>::subWorkerFunction (int idx, int subWIdx, int start, int end, std::vector<T> &inputVector,
std::vector<LockableVector<T>> &outputItems) {
startBarrier.waitForFinish ();
// ============================
// Performing computation phase
//std::cout << "IVLen " << inputVector.size() << std::endl;
activitiesFunctions[subWIdx].first (idx, subWIdx, start, end, inputVector);
compPhaseBarrier.decreaseBarrier ();
// ==============================
// Performing communication phase
// Computing vector which defines the communication phase
CommunicationProtocols protocols = activitiesFunctions[idx].second (idx, subWIdx, start, end, std::ref(inputVector));
if (protocols.size() != 0) {
// Checking if a resize of outputvectors is needed
{
std::unique_lock<std::mutex> lock (outputVectorsMutex);
if (protocols.size() > outputItems.size()) {
outputItems.resize (protocols.size ());
}
}
std::list<int> remainingActivities (protocols.size());
int idx = 0;
std::iota (std::begin(remainingActivities), std::end(remainingActivities), idx++);
// TODO Try to drop the offset!
int vectorOffset = (nextVectorToLock++) % remainingActivities.size();
while (remainingActivities.size() > 0) {
auto it = std::begin (remainingActivities);
std::advance (it, vectorOffset);
while (it!=remainingActivities.end()) {
if (protocols[*it].size() == 0) {
remainingActivities.erase (it++);
}
else {
try {
// TODO Try to lock without tryLockAndGet
std::shared_ptr<LockedVector<T>> targetV = outputItems[*it].tryLockAndGet();
auto &targetProtocol = protocols[*it];
// Inserting data at the end of target vector
for (auto i : targetProtocol) {
targetV->data.emplace_back (i);
}
remainingActivities.erase (it++);
} catch (std::logic_error &e) {
it++;
}
}
}
vectorOffset = 0;
}
}
commPhaseBarrier.decreaseBarrier ();
}
#else
extern std::mutex outputMutex;
#define PRINT(msg) {\
std::unique_lock<std::mutex> lock (outputMutex);\
std::cout << msg << std::endl;\
}
template<typename T>
class Superstep {
public:
/* Describes the data-type necessary to perform the comunication phase:
* The i-th position of the vector contains elements which will be sent to activity i
* of next superstep (length of this vector should be equal to parallelism degree)
*/
using CommunicationProtocols = std::vector<std::vector<T>>;
// Defines the type of a general activity
using ActivityFunction = std::function<void (int, std::vector<T>&)>;
/* Type of function called at the end of superstep to decide whether contiue execution or not
* Arguments:
* index The index of current superstep
* outputVectors (LockableVectors resulting at the end of communication phase
* Returned values:
* -1 Termination reached
* -2 Next superstep
* n>=0 Termination not reached. 'n' is the index of the next superstep
*/
using AtExitFunction = std::function<int (std::vector<LockableVector<T>>&)>;
const int NEXT_STEP_FLAG = -2; // Going to next step during computation
const int EOC_FLAG = -1; // End of computation
private:
// Holds the activity submitted by the user
std::vector<std::pair<ActivityFunction, std::function<CommunicationProtocols (int, std::vector<T>&)>>> activitiesFunctions;
Barrier startBarrier;
Barrier compPhaseBarrier;
Barrier commPhaseBarrier;
std::mutex outputVectorsMutex;
AtExitFunction atExitF;
// Function executed by a generic WorkerThread
void workerFunction (int index, std::vector<T> &inputVector, std::vector<LockableVector<T>> &outputVectors);
static std::atomic_int nextVectorToLock;
public:
Superstep ();
~Superstep ();
int addActivity (ActivityFunction fun, CommunicationProtocols protocol);
int addActivity (ActivityFunction fun, std::function<CommunicationProtocols (int, std::vector<T>&)> protocol);
/* Method to execute this current superstep. It requries a vector of workers on which the activity will be run,
* a vector containing vector which hold input elements for that worker and a LockableVector on which will be
* saved output elements
*/
int runStep (std::vector<WorkerThread> &workers,
std::vector<std::vector<T>> &inputVectors,
std::vector<LockableVector<T>> &outputVectors);
int getActivitiesNumber ();
void setAtExitFunction (AtExitFunction atExit);
};
template<typename T>
std::atomic_int Superstep<T>::nextVectorToLock;
/* ========== ========== ========== ========== ========== */
/* ========== ========== ========== ========== ========== */
template<typename T>
Superstep<T>::Superstep () : startBarrier (0), compPhaseBarrier(0), commPhaseBarrier(0) {
atExitF = AtExitFunction ([&] (std::vector<LockableVector<T>> &outputItems) {
return NEXT_STEP_FLAG;
});
}
template<typename T>
Superstep<T>::~Superstep () {}
template<typename T>
int Superstep<T>::addActivity (ActivityFunction fun, CommunicationProtocols protocols) {
auto protoFun = std::function<Superstep<T>::CommunicationProtocols (std::vector<int> &)> ([protocols] (std::vector<int> els) {
// FIXME In this case 'protocols' array contains the indexes of array --> convert it into elements
return protocols;
});
auto element = std::make_pair<ActivityFunction, std::function<CommunicationProtocols (std::vector<T>&)>>
(std::move(fun), std::move(protoFun));
activitiesFunctions.emplace_back (std::move(element));
return activitiesFunctions.size()-1;
}
template<typename T>
int Superstep<T>::addActivity (ActivityFunction fun, std::function<CommunicationProtocols (int activityIndex, std::vector<T>&)> protocol) {
auto element = std::make_pair<ActivityFunction, std::function<CommunicationProtocols (int activityIndex, std::vector<T>&)>>
(std::move(fun), std::move(protocol));
activitiesFunctions.emplace_back (std::move(element));
return activitiesFunctions.size()-1;
}
template<typename T>
int Superstep<T>::getActivitiesNumber () {
return activitiesFunctions.size();
}
template<typename T>
void Superstep<T>::setAtExitFunction (AtExitFunction atExitFun) {
atExitF = atExitFun;
}
template<typename T>
int Superstep<T>::runStep (std::vector<WorkerThread> &workers,
std::vector<std::vector<T>> &inputVectors,
std::vector<LockableVector<T>> &outputVectors) {
if (workers.size () < activitiesFunctions.size()) {
throw std::runtime_error ("Mismatching between number of workers and number of activities! (#workers < #activities)");
}
if (inputVectors.size() < activitiesFunctions.size())
throw std::runtime_error ("Mismatching between number of activities and number of input queues! (#activities > #queues)");
// Resetting bariers
commPhaseBarrier.reset (activitiesFunctions.size());
compPhaseBarrier.reset (activitiesFunctions.size());
startBarrier.reset (1);
// Setting up worker threads
for (size_t i=0; i<activitiesFunctions.size(); i++) {
// Bind packaged task to arguments
auto lambdaFunction = [&] (int index, std::vector<T> &inputItems, std::vector<LockableVector<T>> &outputItems) {
workerFunction (index, inputItems, outputItems);
};
auto boundedFunction = std::bind (lambdaFunction, i, std::ref(inputVectors[i]), std::ref(outputVectors));
auto packagedTask = std::packaged_task<void()> (boundedFunction);
// Assign created packaged_task to a worker
workers[i].assignActivity (std::move(packagedTask));
}
// Starting workers and waiting for their completion
startBarrier.decreaseBarrier ();
commPhaseBarrier.waitForFinish ();
return atExitF (outputVectors);
}
template<typename T>
void Superstep<T>::workerFunction (int index, std::vector<T> &inputItems, std::vector<LockableVector<T>> &outputItems) {
startBarrier.waitForFinish ();
// ============================
// Performing computation phase
activitiesFunctions[index].first (index, inputItems);
compPhaseBarrier.decreaseBarrier ();
// ==============================
// Performing communication phase
// Computing vector which defines the communication phase
CommunicationProtocols protocols = activitiesFunctions[index].second (index, std::ref(inputItems));
if (protocols.size() != 0) {
// Checking if a resize of outputvectors is needed
{
std::unique_lock<std::mutex> lock (outputVectorsMutex);
if (protocols.size() > outputItems.size()) {
outputItems.resize (protocols.size ());
}
}
std::list<int> remainingActivities (protocols.size());
int idx = 0;
std::iota (std::begin(remainingActivities), std::end(remainingActivities), idx++);
// TODO Try to drop the offset!
int vectorOffset = (nextVectorToLock++) % remainingActivities.size();
while (remainingActivities.size() > 0) {
auto it = std::begin (remainingActivities);
std::advance (it, vectorOffset);
while (it!=remainingActivities.end()) {
if (protocols[*it].size() == 0) {
remainingActivities.erase (it++);
}
else {
try {
// TODO Try to lock without tryLockAndGet
std::shared_ptr<LockedVector<T>> targetV = outputItems[*it].tryLockAndGet();
auto &targetProtocol = protocols[*it];
// Inserting data at the end of target vector
for (auto i : targetProtocol) {
targetV->data.emplace_back (i);
}
remainingActivities.erase (it++);
} catch (std::logic_error &e) {
it++;
}
}
}
vectorOffset = 0;
}
}
outputItems.shrink_to_fit ();
commPhaseBarrier.decreaseBarrier ();
}
#endif
#endif // SUPERSTEP_HPP