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fix import module not used & string check #25

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merged 1 commit into from
Jul 30, 2024

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@sbillinge sbillinge merged commit 181a54a into diffpy:Cookie Jul 30, 2024
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sbillinge added a commit that referenced this pull request Sep 4, 2024
* Lint check & fix to python3 format (#18)

* lint check and change files from python2 to python3

* pre-commit check for these files

* lint check & change to python3 & pre-commit check (#19)

* lint check & change to python3 & pre-commit check

* [pre-commit.ci] auto fixes from pre-commit hooks

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Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

* lint check and fix print and exception python2 issue (#20)

* lint check and fix python2 print and exception issues (#21)

* lint check and fix python2 print and exception issues

* [pre-commit.ci] auto fixes from pre-commit hooks

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Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

* finish parenthesizing print statements (#24)

* finish parenthesizing print statements

* [pre-commit.ci] auto fixes from pre-commit hooks

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Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

* fix too many leading #, import modules, and unused var (#29)

* requirements (#30)

* fix import module not used & string check (#25)

* fix too many leading "#" in string block (#26)

* lint check, remove unused import modules & remove too many "#". (#27)

* remove unused modules, ambiguous variable name (#28)

* cleaning (#31)

* requirements

* clean out __init__

* replace ###

* ins not none in modelevaluators base

* Copyright (#32)

* requirements

* basefunction

* all the copyright statements

* lint check, fix break import modules, remove unused import modules, remove some # (#33)

* fix break import modules, remove unused import modules, fix docstring length (#34)

* fix formatting issue and typo in copyright (#35)

* clean out inits (#38)

* clean out inits

* [pre-commit.ci] auto fixes from pre-commit hooks

* dataclusters.py, modelevaluators/aicc and modelparts.py

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Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

* peakextraction.py and init (#40)

* move untrack doc and requirement files (#41)

* move untrack doc and requirement files

* add requirement in run.txt

* [pre-commit.ci] auto fixes from pre-commit hooks

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Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

* add pyproject.toml (#42)

* add pyproject.toml

* [pre-commit.ci] auto fixes from pre-commit hooks

* update classifiers pyproject.toml

* Delete setup.py

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Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

* move diffpy files to src dir (#44)

* move diffpy files to src dir

* [pre-commit.ci] auto fixes from pre-commit hooks

* add Luke to authors

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Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

* LICENSE (#45)

* add two LICENSE.rst files into cookiecutter

* fix LICENSE.rst and LICENSE_PDFgui.rst with correct references and year

* resolve pdfdataset.py conflict

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Co-authored-by: Simon Billinge <sbillinge@users.noreply.github.com>

* add untrack files and add cookiecut.rst news (#46)

* add untrack files and add cookiecut.rst news

* delete README.txt

* fix py2 -> py3, fix broken import, remove deprecation warning (#47)

* fix py2 -> py3, move deprecation warning

* fix search & split in binary files

* fix broken import, remove deprecated pkg_resource (#50)

* change import path to make it work. (#48)

* fix import modules, py2->py3 (#49)

* fix broken import in doc, change README to rst file. (#51)

* fix broken import in doc, change README to rst file.

* fix os getcwd method

* fix p2 to p3 (#52)

* add test for dataclusters (#54)

* add test for dataclusters

* define eq method in dataclusters.py

* change parametrization form

* add one more case and change reference name to actual

* delete comment

* add two more tests for DataClusters class function.

* change in docstring for clearer explanation for clear method, remove duplicated case for testing behavior, remove other tests.

* change clear method docstring into numpydoc format. Delete dtype for numpy array.

* remove block

* Make edition to condition on res, refactor for setdata to make behavior of the test passed.

* change condition on res

* add condition on x and res are incompatible, update test.

* revert change in setdata method.

* Eq tests (#59)

* remove diffpy/srmise tree

* test for eq

* add attributes in eq method (#60)

* Add set data test cases (#61)

* add test cases to test files and make edition to make sure the behavior of the test pass.

* [pre-commit.ci] auto fixes from pre-commit hooks

* change case in test__eq__ to be compatible with the behavior of setdata

* delete text and redundant tests

* tweaking error message in DataClusters

* [pre-commit.ci] auto fixes from pre-commit hooks

* update test for checking implicit attributes for setdata function

* [pre-commit.ci] auto fixes from pre-commit hooks

* update test for setdata function

* update setdata test to right format.

* update to constructor test & make setdata clear function private

* final tweaks to tests by Simon

* fix actual_attribute typo

* final refactor of actual_attr

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Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Simon Billinge <sbillinge@users.noreply.github.com>

* fix arbitrary.py to numpydoc format (#68)

* fix arbitrary.py to numpydoc format

* pre-commit fix

* change start sentence to 'The'

* print things correctly (#71)

* print things correctly

* change to f string

* reduce print to one line

* change createpeak to actualize function (#72)

* fix import and counting to make it work (#74)

* refactor makeclusters to make it work (#73)

* deprecation remove (#78)

* deprecation remove

* fix to right behavior

* Revert "refactor makeclusters to make it work (#73)" (#79)

This reverts commit 3773bcf.

* try out py2 before py3 refactor to make sure correct workflow (#75)

* fix false counting and numpy to int (#80)

* fix false counting and numpy to int

* [pre-commit.ci] auto fixes from pre-commit hooks

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Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

* numpydoc edition (#81)

* change peakextraction function to numpydoc

* pre-commit run

* remove unused import

* numpydoc build (#82)

* numpydoc build on peakstability (#83)

* numpydoc build for ModelCluster (#85)

* numpydoc build for multimodelselection.py (#87)

* numpydoc documentation build for ModelCluster class (#86)

* numpydoc build for pdfdataset (#88)

* numpydoc build for pdfpeakextraction.py (#89)

* numpydoc build for gaussianoverr.py (#91)

* numpydoc build for gaussianoverr.py

* [pre-commit.ci] auto fixes from pre-commit hooks

* fix pre-commit

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Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

* terminationripples.py numpydoc build (#92)

* numpydoc build for gaussian.py (#90)

* numpydoc build for gaussian.py

* [pre-commit.ci] auto fixes from pre-commit hooks

* pre-commit fix

* update for FWHM and maxwidth

* update for starting sentence

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Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

* numpydoc build for base.py (#95)

* numpydoc build for polynomial.py (#97)

* numpydoc build for fromsequence.py (#99)

* numpydoc build for nanospherical.py (#98)

* numpydoc build for base.py in Baseline class (#96)

* numpydoc build for base.py

* [pre-commit.ci] auto fixes from pre-commit hooks

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Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

* numpydoc build for aic.py (#93)

* numpydoc build for aicc.py (#94)

* numpydoc build for ModelCovariance (#84)

* numpydoc build for ModelCovariance

* update format type and fix indentation issue

* numpydoc build for modelparts.py (#100)

* numpydoc build for modelparts.py

* [pre-commit.ci] auto fixes from pre-commit hooks

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Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

* numpydoc build for basefunction.py (#101)

* api workflow build for diffpy.srmise (#102)

* api workflow build for diffpy.srmise

* [pre-commit.ci] auto fixes from pre-commit hooks

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Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

* add changed news (#103)

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Co-authored-by: Rundong Hua <157993340+stevenhua0320@users.noreply.github.com>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
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