lint check, remove unused import modules & remove too many "#". (#27)

Author: stevenhua0320

diffpy/srmise/baselines/arbitrary.py

@@ -13,10 +13,8 @@
 
 import logging
 
-import matplotlib.pyplot as plt
 import numpy as np
 
-import diffpy.srmise.srmiselog
 from diffpy.srmise.baselines import Polynomial
 from diffpy.srmise.baselines.base import BaselineFunction
 from diffpy.srmise.srmiseerrors import SrMiseEstimationError
@@ -97,7 +95,7 @@ def __init__(self, npars, valuef, jacobianf=None, estimatef=None, Cache=None):
         metadict["estimatef"] = (estimatef, repr)
         BaselineFunction.__init__(self, parameterdict, formats, default_formats, metadict, None, Cache)
 
-    #### Methods required by BaselineFunction ####
+    # Methods required by BaselineFunction ####
 
     def estimate_parameters(self, r, y):
         """Estimate parameters for data baseline.
@@ -133,7 +131,7 @@ def _jacobianraw(self, pars, r, free):
               needed.  True for evaluation, False for no evaluation."""
         nfree = None
         if self.jacobianf is None:
-            nfree = (pars == True).sum()
+            nfree = (pars is True).sum()
             if nfree != 0:
                 emsg = "No jacobian routine provided to Arbitrary."
                 raise NotImplementedError(emsg)

diffpy/srmise/baselines/base.py

@@ -15,10 +15,9 @@
 
 import numpy as np
 
-import diffpy.srmise.srmiselog
 from diffpy.srmise.basefunction import BaseFunction
 from diffpy.srmise.modelparts import ModelPart
-from diffpy.srmise.srmiseerrors import *
+from diffpy.srmise.srmiseerrors import SrMiseDataFormatError
 
 logger = logging.getLogger("diffpy.srmise")
 
@@ -85,9 +84,9 @@ def __init__(
                evaluations."""
         BaseFunction.__init__(self, parameterdict, parformats, default_formats, metadict, base, Cache)
 
-    #### "Virtual" class methods ####
+    # "Virtual" class methods ####
 
-    #### Methods required by BaseFunction ####
+    # Methods required by BaseFunction ####
 
     def actualize(
         self,
@@ -136,17 +135,16 @@ def factory(baselinestr, ownerlist):
         baselinestr: string representing Baseline
         ownerlist: List of BaseFunctions that owner is in
         """
-        from numpy import array
 
         data = baselinestr.strip().splitlines()
 
         # dictionary of parameters
         pdict = {}
         for d in data:
-            l = d.split("=", 1)
-            if len(l) == 2:
+            result = d.split("=", 1)
+            if len(result) == 2:
                 try:
-                    pdict[l[0]] = eval(l[1])
+                    pdict[result[0]] = eval(result[1])
                 except Exception:
                     emsg = "Invalid parameter: %s" % d
                     raise SrMiseDataFormatError(emsg)
@@ -169,10 +167,8 @@ def factory(baselinestr, ownerlist):
 # simple test code
 if __name__ == "__main__":
 
-    import matplotlib.pyplot as plt
     from numpy.random import randn
 
-    from diffpy.srmise.modelcluster import ModelCluster
     from diffpy.srmise.modelevaluators import AICc
     from diffpy.srmise.peaks import GaussianOverR, Peaks
 

diffpy/srmise/baselines/fromsequence.py

@@ -13,11 +13,9 @@
 
 import logging
 
-import matplotlib.pyplot as plt
 import numpy as np
 import scipy.interpolate as spi
 
-import diffpy.srmise.srmiselog
 from diffpy.srmise.baselines.base import BaselineFunction
 
 logger = logging.getLogger("diffpy.srmise")
@@ -80,7 +78,7 @@ def __init__(self, *args, **kwds):
         metadict["y"] = (y, self.xyrepr)
         BaselineFunction.__init__(self, parameterdict, formats, default_formats, metadict, None, Cache=None)
 
-    #### Methods required by BaselineFunction ####
+    # Methods required by BaselineFunction ####
 
     def estimate_parameters(self, r, y):
         """Return empty numpy array.
@@ -151,7 +149,7 @@ def _valueraw(self, pars, r):
                     [r[0], r[-1]],
                     [self.minx, self.maxx],
                 )
-        except (IndexError, TypeError) as e:
+        except (IndexError, TypeError):
             if r < self.minx or r > self.maxx:
                 logger.warn(
                     "Warning: Evaluating interpolating function at %s, outside safe range of %s.",
@@ -169,7 +167,7 @@ def xyrepr(self, var):
 
     def readxy(self, filename):
         """ """
-        from diffpy.srmise.srmiseerrors import SrMiseDataFormatError, SrMiseFileError
+        from diffpy.srmise.srmiseerrors import SrMiseDataFormatError
 
         # TODO: Make this safer
         try:

diffpy/srmise/baselines/nanospherical.py

@@ -13,12 +13,9 @@
 
 import logging
 
-import matplotlib.pyplot as plt
 import numpy as np
 
-import diffpy.srmise.srmiselog
 from diffpy.srmise.baselines.base import BaselineFunction
-from diffpy.srmise.srmiseerrors import SrMiseEstimationError
 
 logger = logging.getLogger("diffpy.srmise")
 
@@ -54,7 +51,7 @@ def __init__(self, Cache=None):
         metadict = {}
         BaselineFunction.__init__(self, parameterdict, formats, default_formats, metadict, None, Cache)
 
-    #### Methods required by BaselineFunction ####
+    # Methods required by BaselineFunction ####
 
     #    def estimate_parameters(self, r, y):
     #        """Estimate parameters for spherical baseline. (Not implemented!)
@@ -90,7 +87,7 @@ def _jacobianraw(self, pars, r, free):
             emsg = "Argument free must have " + str(self.npars) + " elements."
             raise ValueError(emsg)
         jacobian = [None for p in range(self.npars)]
-        if (free == False).sum() == self.npars:
+        if (free is False).sum() == self.npars:
             return jacobian
 
         if np.isscalar(r):
@@ -123,7 +120,7 @@ def _jacobianrawscale(self, pars, r):
                pars[1] = radius
         r - sequence or scalar over which pars is evaluated.
         """
-        s = np.abs(pars[0])
+        np.abs(pars[0])
         R = np.abs(pars[1])
         rdivR = r / R
         # From abs'(s) in derivative, which is equivalent to sign(s) except at 0 where it