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Fix flake8 error of ambiguous name (E741) #74

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Aug 20, 2024
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3 changes: 1 addition & 2 deletions src/diffpy/srfit/equation/builder.py
Original file line number Diff line number Diff line change
Expand Up @@ -213,8 +213,7 @@ def registerFunction(self, name, func, argnames):
opbuilder = wrapFunction(name, func, len(argnames))
for n in argnames:
b = self.builders[n]
l = b.literal
opbuilder.literal.addLiteral(l)
opbuilder.literal.addLiteral(b.literal)

return self.registerBuilder(name, opbuilder)

Expand Down
40 changes: 20 additions & 20 deletions src/diffpy/srfit/fitbase/fitresults.py
Original file line number Diff line number Diff line change
Expand Up @@ -173,8 +173,8 @@ def _calculateCovariance(self):
self.cov = numpy.dot(vh.T.conj() / s**2, vh)
except numpy.linalg.LinAlgError:
self.messages.append("Cannot compute covariance matrix.")
l = len(self.varvals)
self.cov = numpy.zeros((l, l), dtype=float)
matrix_size = len(self.varvals)
self.cov = numpy.zeros((matrix_size, matrix_size), dtype=float)
return

def _calculateJacobian(self):
Expand Down Expand Up @@ -325,17 +325,17 @@ def formatResults(self, header="", footer="", update=False):
lines.append(header)

if not certain:
l = "Some quantities invalid due to missing profile uncertainty"
if not l in self.messages:
self.messages.append(l)
error_message = "Some quantities invalid due to missing profile uncertainty"
if not error_message in self.messages:
self.messages.append(error_message)

lines.extend(self.messages)

## Overall results
l = "Overall"
error_message = "Overall"
if not certain:
l += " (Chi2 and Reduced Chi2 invalid)"
lines.append(l)
error_message += " (Chi2 and Reduced Chi2 invalid)"
lines.append(error_message)
lines.append(_DASHEDLINE)
formatstr = "%-14s %.8f"
lines.append(formatstr % ("Residual", self.residual))
Expand All @@ -351,10 +351,10 @@ def formatResults(self, header="", footer="", update=False):
keys.sort(key=numstr)

lines.append("")
l = "Contributions"
error_message = "Contributions"
if not certain:
l += " (Chi2 and Reduced Chi2 invalid)"
lines.append(l)
error_message += " (Chi2 and Reduced Chi2 invalid)"
lines.append(error_message)
lines.append(_DASHEDLINE)
formatstr = "%-10s %-42.8f"
for name in keys:
Expand All @@ -370,11 +370,11 @@ def formatResults(self, header="", footer="", update=False):
## The variables
if self.varnames:
lines.append("")
l = "Variables"
error_message = "Variables"
if not certain:
m = "Uncertainties invalid"
l += " (%s)" % m
lines.append(l)
error_message += " (%s)" % m
lines.append(error_message)
lines.append(_DASHEDLINE)

varnames = self.varnames
Expand Down Expand Up @@ -409,10 +409,10 @@ def formatResults(self, header="", footer="", update=False):
## The constraints
if self.connames and self.showcon:
lines.append("")
l = "Constrained Parameters"
error_message = "Constrained Parameters"
if not certain:
l += " (Uncertainties invalid)"
lines.append(l)
error_message += " (Uncertainties invalid)"
lines.append(error_message)
lines.append(_DASHEDLINE)

w = 0
Expand All @@ -438,10 +438,10 @@ def formatResults(self, header="", footer="", update=False):
## Variable correlations
lines.append("")
corint = int(corrmin * 100)
l = "Variable Correlations greater than %i%%" % corint
error_message = "Variable Correlations greater than %i%%" % corint
if not certain:
l += " (Correlations invalid)"
lines.append(l)
error_message += " (Correlations invalid)"
lines.append(error_message)
lines.append(_DASHEDLINE)
tup = []
cornames = []
Expand Down
4 changes: 2 additions & 2 deletions src/diffpy/srfit/sas/prcalculator.py
Original file line number Diff line number Diff line change
Expand Up @@ -92,8 +92,8 @@ def __call__(self, r):
self._invertor.y = iq
self._invertor.err = diq
c, c_cov = self._invertor.invert_optimize()
l = lambda x: self._invertor.pr(c, x)
pr = map(l, r)
calculate_pr = lambda x: self._invertor.pr(c, x)
pr = map(calculate_pr, r)

pr = numpy.array(pr)
return self.scale.value * pr
Expand Down
4 changes: 2 additions & 2 deletions src/diffpy/srfit/tests/testdiffpyparset.py
Original file line number Diff line number Diff line change
Expand Up @@ -42,9 +42,9 @@ def testDiffpyStructureParSet(self):

a1 = Atom("Cu", xyz=numpy.array([0.0, 0.1, 0.2]), Uisoequiv=0.003)
a2 = Atom("Ag", xyz=numpy.array([0.3, 0.4, 0.5]), Uisoequiv=0.002)
l = Lattice(2.5, 2.5, 2.5, 90, 90, 90)
lattice = Lattice(2.5, 2.5, 2.5, 90, 90, 90)

dsstru = Structure([a1, a2], l)
dsstru = Structure([a1, a2], lattice)
# Structure makes copies
a1 = dsstru[0]
a2 = dsstru[1]
Expand Down
66 changes: 33 additions & 33 deletions src/diffpy/srfit/tests/testparameter.py
Original file line number Diff line number Diff line change
Expand Up @@ -23,52 +23,52 @@
class TestParameter(unittest.TestCase):
def testSetValue(self):
"""Test initialization."""
l = Parameter("l")
l_parameter = Parameter("l")

l.setValue(3.14)
self.assertAlmostEqual(3.14, l.getValue())
l_parameter.setValue(3.14)
self.assertAlmostEqual(3.14, l_parameter.getValue())

# Try array
import numpy

x = numpy.arange(0, 10, 0.1)
l.setValue(x)
self.assertTrue(l.getValue() is x)
self.assertTrue(l.value is x)
l_parameter.setValue(x)
self.assertTrue(l_parameter.getValue() is x)
self.assertTrue(l_parameter.value is x)

# Change the array
y = numpy.arange(0, 10, 0.5)
l.value = y
self.assertTrue(l.getValue() is y)
self.assertTrue(l.value is y)
l_parameter.value = y
self.assertTrue(l_parameter.getValue() is y)
self.assertTrue(l_parameter.value is y)

# Back to scalar
l.setValue(1.01)
self.assertAlmostEqual(1.01, l.getValue())
self.assertAlmostEqual(1.01, l.value)
l_parameter.setValue(1.01)
self.assertAlmostEqual(1.01, l_parameter.getValue())
self.assertAlmostEqual(1.01, l_parameter.value)
return


class TestParameterProxy(unittest.TestCase):
def testProxy(self):
"""Test the ParameterProxy class."""
l = Parameter("l", 3.14)
l_parameter = Parameter("l", 3.14)

# Try Accessor adaptation
la = ParameterProxy("l2", l)
la = ParameterProxy("l2", l_parameter)

self.assertEqual("l2", la.name)
self.assertEqual(l.getValue(), la.getValue())
self.assertEqual(l_parameter.getValue(), la.getValue())

# Change the parameter
l.value = 2.3
self.assertEqual(l.getValue(), la.getValue())
self.assertEqual(l.value, la.value)
l_parameter.value = 2.3
self.assertEqual(l_parameter.getValue(), la.getValue())
self.assertEqual(l_parameter.value, la.value)

# Change the proxy
la.value = 3.2
self.assertEqual(l.getValue(), la.getValue())
self.assertEqual(l.value, la.value)
self.assertEqual(l_parameter.getValue(), la.getValue())
self.assertEqual(l_parameter.value, la.value)

return

Expand All @@ -79,36 +79,36 @@ def testWrapper(self):

This adapts a Parameter to the Parameter interface. :)
"""
l = Parameter("l", 3.14)
l_parameter = Parameter("l", 3.14)

# Try Accessor adaptation
la = ParameterAdapter("l", l, getter=Parameter.getValue, setter=Parameter.setValue)
la = ParameterAdapter("l", l_parameter, getter=Parameter.getValue, setter=Parameter.setValue)

self.assertEqual(l.name, la.name)
self.assertEqual(l.getValue(), la.getValue())
self.assertEqual(l_parameter.name, la.name)
self.assertEqual(l_parameter.getValue(), la.getValue())

# Change the parameter
l.setValue(2.3)
self.assertEqual(l.getValue(), la.getValue())
l_parameter.setValue(2.3)
self.assertEqual(l_parameter.getValue(), la.getValue())

# Change the adapter
la.setValue(3.2)
self.assertEqual(l.getValue(), la.getValue())
self.assertEqual(l_parameter.getValue(), la.getValue())

# Try Attribute adaptation
la = ParameterAdapter("l", l, attr="value")
la = ParameterAdapter("l", l_parameter, attr="value")

self.assertEqual(l.name, la.name)
self.assertEqual(l_parameter.name, la.name)
self.assertEqual("value", la.attr)
self.assertEqual(l.getValue(), la.getValue())
self.assertEqual(l_parameter.getValue(), la.getValue())

# Change the parameter
l.setValue(2.3)
self.assertEqual(l.getValue(), la.getValue())
l_parameter.setValue(2.3)
self.assertEqual(l_parameter.getValue(), la.getValue())

# Change the adapter
la.setValue(3.2)
self.assertEqual(l.getValue(), la.getValue())
self.assertEqual(l_parameter.getValue(), la.getValue())

return

Expand Down
24 changes: 12 additions & 12 deletions src/diffpy/srfit/tests/testsgconstraints.py
Original file line number Diff line number Diff line change
Expand Up @@ -54,18 +54,18 @@ def test_ObjCryst_constrainSpaceGroup(self):
stru.sgpars.adppars

# Check the orthorhombic lattice
l = stru.getLattice()
self.assertTrue(l.alpha.const)
self.assertTrue(l.beta.const)
self.assertTrue(l.gamma.const)
self.assertEqual(pi / 2, l.alpha.getValue())
self.assertEqual(pi / 2, l.beta.getValue())
self.assertEqual(pi / 2, l.gamma.getValue())

self.assertFalse(l.a.const)
self.assertFalse(l.b.const)
self.assertFalse(l.c.const)
self.assertEqual(0, len(l._constraints))
lattice = stru.getLattice()
self.assertTrue(lattice.alpha.const)
self.assertTrue(lattice.beta.const)
self.assertTrue(lattice.gamma.const)
self.assertEqual(pi / 2, lattice.alpha.getValue())
self.assertEqual(pi / 2, lattice.beta.getValue())
self.assertEqual(pi / 2, lattice.gamma.getValue())

self.assertFalse(lattice.a.const)
self.assertFalse(lattice.b.const)
self.assertFalse(lattice.c.const)
self.assertEqual(0, len(lattice._constraints))

# Now make sure the scatterers are constrained properly
scatterers = stru.getScatterers()
Expand Down