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Commit 45e53c4

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Daniel J. Greenhoe
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pdf plot support
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4 files changed

+133
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‎.gitignore‎

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@@ -4,4 +4,9 @@ trash/*
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fasta/*.gb
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fasta/*.dat
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data/*
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plots/*
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plots/*
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pdfplots/*.aux
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pdfplots/*.log
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pdfplots/*.out
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pdfplots/*.pdf
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‎labs/LabOCS.cpp‎

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@@ -46,7 +46,7 @@ TEST( LabOCS, wdie )
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//---------------------------------------------------------------------------
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TEST( LabOCS, ndie )
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{
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const unsigned seed = 0x5EED;
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const unsigned seed = 0x5EED;
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lab_die_nonstat34( seed, 1200 , 120, 15, "../plots/diedft" ); // Example 4.7 (DFT analyis of die sequence)
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lab_die_nonstat34( seed, 12000, 1200, 16, "../plots/diedft" ); // Example 4.8 (DFT analyis of die sequence)
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lab_die_nonstat34( seed, 12000, 120, 16, "../plots/diedft" ); // Example 4.9 (DFT analyis of die sequence)

‎pdfplots/makefile‎

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#-----------------------------------------------------------------------------
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# Project Makefile
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# Daniel J. Greenhoe
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#-----------------------------------------------------------------------------
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#--------------------------------------
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# Paths
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#--------------------------------------
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DIRPLOTS = ../plots
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DIRSTY = ../../common/sty
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#--------------------------------------
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# Files
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#--------------------------------------
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GRP_DIE = \
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$(DIRPLOTS)/fdie_5eed_16002_auto.pdf \
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$(DIRPLOTS)/fdie_5eed_16002_histo.pdf \
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$(DIRPLOTS)/fdie_5eed_51_seq.pdf \
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$(DIRPLOTS)/rdie_5eed_16002_auto.pdf \
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$(DIRPLOTS)/rdie_5eed_16002_histo.pdf \
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$(DIRPLOTS)/rdie_5eed_51_seq.pdf \
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$(DIRPLOTS)/wdie_5eed_16002_auto.pdf \
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$(DIRPLOTS)/wdie_5eed_16002_histo.pdf \
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$(DIRPLOTS)/wdie_5eed_51_seq.pdf \
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$(DIRPLOTS)/wrdie_5eed_16002_auto.pdf \
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$(DIRPLOTS)/wrdie_5eed_16002_histo.pdf \
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$(DIRPLOTS)/wrdie_5eed_51_seq.pdf
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GRP_DNA = \
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$(DIRPLOTS)/dna_5eed_16000_auto.pdf \
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$(DIRPLOTS)/dna_5eed_16000_histo.pdf \
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$(DIRPLOTS)/dna_5eed_51_seq.pdf \
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$(DIRPLOTS)/dna_papaya1446_51_seq.pdf \
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$(DIRPLOTS)/dna_papaya1446_auto.pdf \
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$(DIRPLOTS)/dna_papaya1446_histo.pdf \
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$(DIRPLOTS)/dna_SARSCoV2_51_seq.pdf \
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$(DIRPLOTS)/dna_SARSCoV2_auto.pdf \
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$(DIRPLOTS)/dna_SARSCoV2_histo.pdf
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GRP_SPIN = \
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$(DIRPLOTS)/spin_5eed_16002_auto.pdf \
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$(DIRPLOTS)/spin_5eed_16002_histo.pdf \
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$(DIRPLOTS)/spin_5eed_51_seq.pdf \
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$(DIRPLOTS)/wspin_5eed_16002_auto.pdf \
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$(DIRPLOTS)/wspin_5eed_16002_histo.pdf \
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$(DIRPLOTS)/wspin_5eed_51_seq.pdf
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FILE_STY = \
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$(DIRSTY)/wavelets.sty \
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$(DIRSTY)/math.sty \
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$(DIRSTY)/dan.sty \
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$(DIRSTY)/defaults.sty \
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$(DIRSTY)/fonts.sty \
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$(DIRSTY)/packages.sty \
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$(DIRSTY)/xsd.sty \
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$(DIRSTY)/language.sty
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#--------------------------------------
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# Programs
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#--------------------------------------
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PRG_TYPESET = xelatex.exe
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#--------------------------------------
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# master build rule
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#--------------------------------------
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top: $(GRP_DIE) $(GRP_DNA) $(GRP_SPIN)
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@echo Done ... graphics pdfs are ready!
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#--------------------------------------
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# implicit build control
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#--------------------------------------
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{$(DIRPLOTS)}.tex.pdf:
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$(PRG_TYPESET) $(DIRPLOTS)/$&.tex
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#--------------------------------------
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# commands
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#--------------------------------------
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clean:
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del *.aux
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del *.log
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del *.out
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scrub:
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make clean
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del *.pdf
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‎pdfplots/shelltop.tex‎

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%=============================================================================
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% Daniel J. Greenhoe
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% XeLaTeX file
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% preamble packages for shell files to
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% generate tight pdf graphics file for inclusion in a document
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%============================================================================
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\documentclass{article}%
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%--------------------------------------
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% Style Packages
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%--------------------------------------
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\usepackage{../../common/sty/packages}%
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\usepackage{../../common/sty/fonts}%
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\usepackage{../../common/sty/dan}%
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\usepackage{../../common/sty/colors_rgb}%
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%\usepackage{../../common/sty/colors_cmyk}%
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%\usepackage{../../common/sty/colors_gray}%
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\usepackage{../../common/sty/math}%
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\usepackage{../../common/sty/wavelets}%
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%\usepackage{../../common/sty/language}%
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\usepackage{../../common/sty/ocs}%
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\usepackage{../../common/sty/defaults} % default values
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\usepackage{../../common/sty/switches} %
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%--------------------------------------
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% color space
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%--------------------------------------
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%\selectcolormodel{cmyk}%
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\selectcolormodel{rgb}%
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%--------------------------------------
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% redefine some commands
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%--------------------------------------
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\renewcommand{\struct}[1]{{#1}}% place here and in the index and under index structures! heading
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\renewcommand{\structe}[1]{\emph{#1}}% place here with emphasis and in the index and under index structures! heading
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\renewcommand{\structb}[1]{\textbf{#1}}% place here with emphasis and in the index and under index structures! heading
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\renewcommand{\structd}[1]{\textbf{#1}}% place here with emphasis and in the index and under index structures! heading
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%--------------------------------------
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% preview mode
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% reference: http://tex.stackexchange.com/questions/25400/ps2pdf-depscrop-stops-short-with-pstricks-uput
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%--------------------------------------
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\usepackage[active,tightpage]{preview}%
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\PreviewBorder=0pt%
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\PreviewEnvironment{pspicture}%

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