Python functions to convert calcium imaging data and associated intracellular electrophysiology data to Neurodata Without Borders (NWB) file format.
PyNWB installation instructions are available here. Other dependencies include numpy, scipy, datetime, which often come preinstalled.
To get the code with the accompanying example data and test it, download GIN repository calcium-imaging-mock-repo.
Developed by Martynas Dervinis (martynas.dervinis@gmail.com).
Keywords: Neurodata Without Borders; NWB; pynwb; calcium imaging, optical physiology; ophys; intracellular electrophysiology, icephys, FAIR principles; open science.