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Correct, we consider such edges illegal and do not do anything. You could remove such edges prior to layout and restore them back when layout is finished.
CoSE is a compound graph layout algorithm and such edges are illegal for compound graphs by definition. Feel free to make the necessary changes and make a PR though.
I.e. edges from a parent node to one of its children, grand-children, etc. or the reverse.
Example:
When at least one such edge exists in the model, the layout does not do anything (i.e. no nodes are moved).
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