DESCRIPTION

Package: brainGraph
Type: Package
Version: 3.0.3
Date: 2024-02-20
Title: Graph Theory Analysis of Brain MRI Data
Authors@R: person(given="Christopher G.", family="Watson",
                  email="cgwatson@bu.edu", role=c("aut", "cre"),
                  comment=c(ORCID="0000-0002-7082-7631"))
Description: A set of tools for performing graph theory analysis of brain MRI
    data. It works with data from a Freesurfer analysis (cortical thickness,
    volumes, local gyrification index, surface area), diffusion tensor
    tractography data (e.g., from FSL) and resting-state fMRI data (e.g., from
    DPABI). It contains a graphical user interface for graph visualization and
    data exploration, along with several functions for generating useful
    figures.
URL: https://github.com/cwatson/brainGraph
BugReports: https://groups.google.com/forum/?hl=en#!forum/brainGraph-help
LazyData: true
Depends:
    R (>= 3.5.0),
    igraph (>= 1.2.4),
Imports:
    abind,
    data.table (>= 1.12.4),
    doParallel,
    foreach,
    grid,
    lattice,
    MASS,
    Matrix,
    methods,
    permute,
    parallel
Suggests:
    Hmisc,
    RGtk2,
    ade4,
    boot,
    cairoDevice,
    car,
    expm,
    ggplot2,
    ggrepel,
    gridExtra,
    mediation,
    oro.nifti,
    scales
License: GPL-3
RoxygenNote: 6.1.1
Collate: 
    'glm_stats.R'
    'brainGraph_GLM.R'
    'glm_methods.R'
    'NBS.R'
    'analysis_random_graphs.R'
    'atlas.R'
    'auc.R'
    'boot_global.R'
    'brainGraph_mediate.R'
    'centr_lev.R'
    'communicability.R'
    'contract_brainGraph.R'
    'corr_matrix.R'
    'count_edges.R'
    'create_graphs.R'
    'create_mats.R'
    'data.R'
    'data_tables.R'
    'distances.R'
    'edge_asymmetry.R'
    'get_resid.R'
    'glm_design.R'
    'glm_fit.R'
    'glm_randomise.R'
    'graph_efficiency.R'
    'hubs.R'
    'import.R'
    'individ_contrib.R'
    'list.R'
    'method_helpers.R'
    'mtpc.R'
    'methods.R'
    'permute_group.R'
    'plot_brainGraph.R'
    'plot_brainGraph_gui.R'
    'plot_brainGraph_multi.R'
    'plot_global.R'
    'plot_group_means.R'
    'plot_rich_norm.R'
    'plot_vertex_measures.R'
    'random_graphs.R'
    'rich_club.R'
    'robustness.R'
    's_core.R'
    'set_brainGraph_attributes.R'
    'small_world.R'
    'spatial_dist.R'
    'update_brainGraph_gui.R'
    'utils.R'
    'utils_matrix.R'
    'vertex_roles.R'
    'vulnerability.R'
    'write_brainnet.R'
    'zzz.R'