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[FIX] fix lesion segmentation output (and refactor) #727

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merged 25 commits into from
Jul 20, 2022

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Remi-Gau
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fixes #725
fixes #635
fixes #655

@Remi-Gau Remi-Gau changed the base branch from main to dev July 20, 2022 10:20
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codecov bot commented Jul 20, 2022

Codecov Report

Merging #727 (81f4f67) into dev (a0bff06) will increase coverage by 1.38%.
The diff coverage is 81.98%.

@@            Coverage Diff             @@
##              dev     #727      +/-   ##
==========================================
+ Coverage   76.20%   77.58%   +1.38%     
==========================================
  Files         214      216       +2     
  Lines        5513     5545      +32     
==========================================
+ Hits         4201     4302     +101     
+ Misses       1312     1243      -69     
Flag Coverage Δ
unittests 77.58% <81.98%> (+1.38%) ⬆️

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted Files Coverage Δ
...ches/lesion/setBatchLesionAbnormalitiesDetection.m 0.00% <0.00%> (ø)
src/defaults/set_spm_2_bids_defaults.m 98.94% <ø> (ø)
src/infra/resizeAliMask.m 0.00% <0.00%> (ø)
...orkflows/lesion/bidsLesionAbnormalitiesDetection.m 0.00% <0.00%> (ø)
src/workflows/lesion/bidsLesionSegmentation.m 0.00% <0.00%> (ø)
src/workflows/preproc/bidsGenerateT1map.m 100.00% <ø> (ø)
src/workflows/preproc/bidsRealignReslice.m 52.38% <0.00%> (+6.54%) ⬆️
src/workflows/preproc/bidsResliceTpmToFunc.m 0.00% <0.00%> (ø)
src/workflows/preproc/bidsSpatialPrepro.m 70.00% <0.00%> (+4.37%) ⬆️
src/IO/getData.m 93.93% <87.50%> (-2.36%) ⬇️
... and 9 more

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@Remi-Gau Remi-Gau merged commit f7bfc55 into cpp-lln-lab:dev Jul 20, 2022
@Remi-Gau Remi-Gau deleted the lesion_seg branch August 24, 2022 08:56
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