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Merge pull request #99 from cpp-lln-lab/marcobarilari-patch-3
Update code_and_data_management.md
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doc/code_and_data_management.md

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## Version control
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In the lab we (try) to stick to version control for code with git/github and data with datalad and gin. Somewhere else is already mentioned but repetita iuvant so
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1. Install git on your computer
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2. Create a GITHUB account and ask to be added to the lab organization [https://github.com/cpp-lln-lab]
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3. Make sure you have your SSH key for GITHUB following this tutorial
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## Data management
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for MRI data the lab is moving towards using the BIDS data structure
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* bids starter kit
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* bids specification
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[GIN organization](https://gin.g-node.org/cpp-lln-lab) for source, raw, and preprocessed data for conversion control and sharing
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Dataset summary that puts together all the bidsified raw and derivatives repos of the lab and summarize metadata in a table from the GIN repo above:
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Dataset summary that puts together all the bidsified raw and derivatives repos of the lab and summarizes metadata in a table from the GIN repo above:
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- [website](https://cpp-lln-lab.github.io/Datasets/)
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- [Githuba repo CPP_Datasets](https://github.com/cpp-lln-lab/CPP_Datasets)
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Datalad superdataset to grab all the repo together (these are submodules in the [Githuba repo CPP_Datasets](https://github.com/cpp-lln-lab/CPP_Datasets):
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- https://github.com/cpp-lln-lab/cpp-lln-lab_derivatives
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- https://github.com/cpp-lln-lab/cpp-lln-lab_source
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- https://github.com/cpp-lln-lab/cpp-lln-lab_derivatives
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- https://github.com/cpp-lln-lab/cpp-lln-lab_source
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Guidelines to maintain the CPP dataset https://github.com/cpp-lln-lab/dataset_maintenance
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Tools:
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- https://github.com/cpp-lln-lab/template_datalad_bids-raw
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- https://github.com/cpp-lln-lab/CPP_dcm2Bids
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- https://github.com/cpp-lln-lab/letswave_bids_import
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Short guidelines:
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- not suitable for an “online” usage (eg running analyses within the folder), it is a cloud service so reading and writing is as fast as your internet connection
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- Long term storage
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- Please, be organized. Imagine that another person in the future will open that folder and make sense of the content in less than 2 minutes

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