Merge branch 'release/4.6.2'

Author: remiceres

.github/workflows/ci.yml

@@ -19,7 +19,7 @@ permissions:
 
 jobs:
   Continuous-Integration-Actions:
-    runs-on: self-hosted
+    runs-on: [self-hosted, corese-stack-ubuntu-24]
 
     env:
       PACKAGE_TOKEN: ${{ secrets.JLS_TOKEN }}
@@ -36,7 +36,7 @@ jobs:
         uses: actions/setup-java@v4
         with:
           java-version: 21
-          distribution: 'temurin'
+          distribution: "temurin"
 
       - name: Cache Gradle
         uses: actions/cache@v4

.github/workflows/publish-prerelease.yml

@@ -5,29 +5,29 @@ on:
   workflow_dispatch:
     inputs:
       ref:
-        description: 'Tag to run workflow on'
+        description: "Tag to run workflow on"
         required: true
   push:
     branches:
       - develop
 
 jobs:
-  prerelease:
+  prerelease-github:
     name: Build and Publish Pre-release
-    runs-on: ubuntu-latest
+    runs-on: [self-hosted, corese-stack-ubuntu-24]
     permissions:
       contents: write
 
     steps:
       - name: Checkout code
         uses: actions/checkout@v4
 
-      - name: Set up JDK 11
+      - name: Set up JDK 21
         uses: actions/setup-java@v4
         with:
-          distribution: 'temurin'
-          java-version: '11'
-          cache: 'gradle'
+          distribution: "temurin"
+          java-version: "21"
+          cache: "gradle"
 
       - name: Cache Gradle
         uses: actions/cache@v4
@@ -38,7 +38,11 @@ jobs:
             ${{ runner.os }}-gradle-
 
       - name: Build project
-        run: ./gradlew build
+        run: ./gradlew shadowJar
+
+      - name: Generate timestamp
+        id: timestamp
+        run: echo "timestamp=$(date '+%d %B %Y, %H:%M:%S')" >> $GITHUB_OUTPUT
 
       - name: Publish single pre-release
         uses: ncipollo/release-action@v1
@@ -49,6 +53,12 @@ jobs:
           body: |
             🚧 This is the latest build from the `develop` branch.
             Not intended for production use.
+
+            **Last Updated:** ${{ steps.timestamp.outputs.timestamp }}
+            **Build Info:**
+            - Branch: `${{ github.ref_name }}`
+            - Commit: `${{ github.sha }}`
+            - Build Time: `${{ steps.timestamp.outputs.timestamp }}`
           prerelease: true
           allowUpdates: true
           replacesArtifacts: true

.github/workflows/release-github.yml

@@ -5,15 +5,15 @@ on:
   workflow_dispatch:
     inputs:
       ref:
-        description: 'Tag to run workflow on'
+        description: "Tag to run workflow on"
         required: true
   push:
     tags:
       - "v*.*.*"
 
 jobs:
-  release:
-    runs-on: ubuntu-latest
+  release-github:
+    runs-on: [self-hosted, corese-stack-ubuntu-24]
     permissions:
       contents: write
 
@@ -23,12 +23,12 @@ jobs:
         with:
           ref: ${{ github.event.inputs.ref || github.ref_name }}
 
-      - name: Set up JDK 11
+      - name: Set up JDK 21
         uses: actions/setup-java@v4
         with:
-          distribution: 'temurin'
-          java-version: '11'
-          cache: 'gradle'
+          distribution: "temurin"
+          java-version: "21"
+          cache: "gradle"
 
       - name: Cache Gradle
         uses: actions/cache@v4
@@ -58,4 +58,4 @@ jobs:
           bodyFile: "release_notes.md"
           tag: ${{ github.ref_name }}
           name: "Release ${{ github.ref_name }}"
-          draft: true
+          draft: true

.github/workflows/release-maven-central.yml

@@ -1,26 +1,32 @@
 name: Publish Maven Central
-run-name: ${{ github.actor }} triggered Maven Central release on ${{ github.ref_name }}
+run-name: ${{ github.actor }} triggered Maven Central release on ${{ github.event.inputs.ref || github.ref_name }}
 
 on:
   push:
     tags:
       - "v*.*.*"
   workflow_dispatch:
+    inputs:
+      ref:
+        description: "Branch or tag to publish (e.g. develop or v4.6.4)"
+        required: true
 
 jobs:
-  release:
-    runs-on: ubuntu-latest
+  release-maven-central:
+    runs-on: [self-hosted, corese-stack-ubuntu-24]
 
     steps:
       - name: Checkout code
         uses: actions/checkout@v4
+        with:
+          ref: ${{ github.event.inputs.ref || github.ref }}
 
-      - name: Set up JDK 11
+      - name: Set up JDK 21
         uses: actions/setup-java@v4
         with:
-          distribution: 'temurin'
-          java-version: '11'
-          cache: 'gradle'
+          distribution: "temurin"
+          java-version: "21"
+          cache: "gradle"
 
       - name: Cache Gradle
         uses: actions/cache@v4
@@ -30,13 +36,13 @@ jobs:
           restore-keys: |
             ${{ runner.os }}-gradle-
 
-      - name: Build and publish to Sonatype (staging only)
+      - name: Publish to Maven Central via Vanniktech
         env:
-          OSSRH_USERNAME: ${{ secrets.OSSRH_USERNAME }}
-          OSSRH_PASSWORD: ${{ secrets.OSSRH_PASSWORD }}
-          GPG_SIGNING_KEY: ${{ secrets.GPG_SIGNING_KEY }}
-          GPG_SIGNING_PASSPHRASE: ${{ secrets.GPG_SIGNING_PASSPHRASE }}
-        run: ./gradlew publishToSonatype
+          ORG_GRADLE_PROJECT_mavenCentralUsername: ${{ secrets.SONATYPE_USERNAME }}
+          ORG_GRADLE_PROJECT_mavenCentralPassword: ${{ secrets.SONATYPE_PASSWORD }}
+          ORG_GRADLE_PROJECT_signingInMemoryKey: ${{ secrets.GPG_SIGNING_KEY }}
+          ORG_GRADLE_PROJECT_signingInMemoryKeyPassword: ${{ secrets.GPG_SIGNING_PASSPHRASE }}
+        run: ./gradlew publishToMavenCentral
 
       - name: Manual Release Reminder
-        run: echo "The artifacts have been staged on Sonatype. Please log in to Sonatype Nexus to close and release the staging repository manually."
+        run: echo "Upload complete. Please finalize the deployment at https://central.sonatype.com/publishing/deployments"

.github/workflows/sphinx-prod.yml

@@ -11,45 +11,45 @@ permissions:
   contents: write
 
 jobs:
-  Continuous-Integration-Actions:
-    runs-on: self-hosted
+  build-production-docs:
+    runs-on: [self-hosted, corese-stack-ubuntu-24]
 
     env:
       PACKAGE_TOKEN: ${{ secrets.JLS_TOKEN }}
 
     steps:
-    - name: Checkout repository
-      uses: actions/checkout@v4
-      with:
-        ref: main
+      - name: Checkout repository
+        uses: actions/checkout@v4
+        with:
+          ref: main
 
-    - name: Check existing tags before fetch
-      run: git tag --sort=-v:refname || echo "No tags found"
+      - name: Check existing tags before fetch
+        run: git tag --sort=-v:refname || echo "No tags found"
 
-    - name: Delete all local tags to avoid conflicts
-      run: git tag -d $(git tag) || echo "No tags to delete"
+      - name: Delete all local tags to avoid conflicts
+        run: git tag -d $(git tag) || echo "No tags to delete"
 
-    - name: Fetch updated tags
-      run: git fetch --prune --tags --force
+      - name: Fetch updated tags
+        run: git fetch --prune --tags --force
 
-    - name: Check tags after fetch
-      run: git tag --sort=-v:refname || echo "No tags found after fetch"
+      - name: Check tags after fetch
+        run: git tag --sort=-v:refname || echo "No tags found after fetch"
 
-    - name: Build Sphinx documentation with multiversion
-      run: |
-        set -x  # Enable debug mode
-        source /builds/miniconda3/etc/profile.d/conda.sh
-        conda activate corese-core-documentation
+      - name: Build Sphinx documentation with multiversion
+        run: |
+          set -x  # Enable debug mode
+          source /builds/miniconda3/etc/profile.d/conda.sh
+          conda activate corese-core-documentation
 
-        sphinx-multiversion docs/source build/html -D exhale_args.containmentFolder="\${sourcedir}/java_api"
+          sphinx-multiversion docs/source build/html -D exhale_args.containmentFolder="\${sourcedir}/java_api"
 
-        chmod +x docs/switcher_generator.sh
-        ./docs/switcher_generator.sh build/html/switcher.json build/html/index.html
-        set +x  # Disable debug mode
+          chmod +x docs/switcher_generator.sh
+          ./docs/switcher_generator.sh build/html/switcher.json build/html/index.html
+          set +x  # Disable debug mode
 
-    - name: Deploy to GitHub Pages
-      uses: peaceiris/actions-gh-pages@v3
-      with:
-        github_token: ${{ secrets.GITHUB_TOKEN }}
-        publish_dir: ./build/html
-        keep_files: true
+      - name: Deploy to GitHub Pages
+        uses: peaceiris/actions-gh-pages@v3
+        with:
+          github_token: ${{ secrets.GITHUB_TOKEN }}
+          publish_dir: ./build/html
+          keep_files: true

CHANGELOG.md

@@ -1,6 +1,19 @@
 <!-- markdownlint-disable MD024 -->
 # Corese Changelog
 
+## Version 4.6.2 - 2025-08-01
+
+### Changed
+
+- Remove `module-info.java` from the `corese-command` module to avoid issues with Java 21 and later versions. This file is not needed for command-line applications and its removal simplifies the build process.
+- Update JDK version to 21 in GitHub workflows.
+- Update Corese-Core dependency to version `4.6.4`.
+- Update error messages for clarity and consistency.
+
+### Fixed
+
+- Fixed bugs in installation scripts for Linux, macOS, and Windows.
+
 ## Version 4.6.1 – 2025-06-17
 
 ### Added

README.md

@@ -3,30 +3,30 @@
 
 <p align="center">
     <a href="https://project.inria.fr/corese/">
-        <img src="docs/source/_static/logo/corese-command-logo.svg" width="200" alt="Corese-Command-logo">
+        <img src="docs/source/_static/logo/corese-command.svg" width="200" alt="Corese-Command-logo">
     </a>
     <br>
     <strong>Command-line tool for the Semantic Web of Linked Data</strong>
 </p>
 
 [![License: CECILL-C](https://img.shields.io/badge/License-CECILL--C-blue.svg)](https://cecill.info/licences/Licence_CeCILL-C_V1-en.html) [![Discussions](https://img.shields.io/badge/Discussions-GitHub-blue)](https://github.com/orgs/corese-stack/discussions)
 
-## ✨ Features
+## Features
 
 - Convert RDF data formats (Turtle, RDF/XML, N-Triples, etc.)
 - Execute SPARQL queries on local or remote files
 - Query SPARQL endpoints
 - Validate RDF graphs using SHACL
 - Canonicalize RDF data
 
-## 🚀 Getting Started
+## Getting Started
 
 Install Corese-Command using your preferred platform:
 
 ### Linux
 
 <a href='https://flathub.org/apps/fr.inria.corese.CoreseCommand'>
-    <img width='140' alt='Get it on Flathub' src='https://flathub.org/api/badge?locale=en'/>
+    <img width='140' alt='Get it on Flathub' src='docs/source/_static/logo/badge_flathub.svg'/>
 </a>
 
 ```shell
@@ -45,24 +45,26 @@ curl -fsSL https://raw.githubusercontent.com/corese-stack/corese-command/main/pa
 iwr -useb https://raw.githubusercontent.com/corese-stack/corese-command/main/packaging/scripts/install-windows.ps1 | iex
 ```
 
-You’ll then be able to use Corese-Command via the corese command in your terminal.
-
 ### Manual Installation (cross-platform)
 
 You can also use Corese-Command as a standalone `.jar` file or add it to a Java project via Maven.
 
-> Requires Java 11 or higher.
+> Requires Java 21 or higher.
 
-- [🔗 GitHub Releases](https://github.com/corese-stack/corese-command/releases)
-- [📦 Maven Central](https://central.sonatype.com/artifact/fr.inria.corese/corese-command)
+<a href='https://github.com/corese-stack/corese-command/releases'>
+    <img width='140' alt='Get it on GitHub' src='docs/source/_static/logo/badge_github.svg'/>
+</a>
+<a href='https://central.sonatype.com/artifact/fr.inria.corese/corese-command'>
+    <img width='140' alt='Get it on Maven Central' src='docs/source/_static/logo/badge_maven.svg'/>
+</a>
 
 Run manually with:
 
 ```shell
 java -jar corese-command-standalone.jar
 ```
 
-## ✅ Example Usage
+## Example Usage
 
 ```shell
 # Run a simple SPARQL query on an RDF file
@@ -89,19 +91,19 @@ corese canonicalize -i data.ttl -of rdfc-1.0-sha256
 corese query-endpoint -q 'SELECT * WHERE {?s ?p ?o}' -e "https://dbpedia.org/sparql"
 ```
 
-## 📖 Documentation
+## Documentation
 
-- [Getting Started Guide](https://corese-stack.github.io/corese-command/v4.6.1/user_guide.html)
+- [Getting Started Guide](https://corese-stack.github.io/corese-command/v4.6.2/user_guide.html)
 
-## 🤝 Contributing
+## Contributing
 
 We welcome contributions! Here’s how to get involved:
 
 - [GitHub Discussions](https://github.com/orgs/corese-stack/discussions)
 - [Issue Tracker](https://github.com/corese-stack/corese-command/issues)
 - [Pull Requests](https://github.com/corese-stack/corese-command/pulls)
 
-## 🔗 Useful Links
+## Useful Links
 
 - [Corese Website](https://corese-stack.github.io/corese-command/)
 - Mailing List: <corese-users@inria.fr>