diff --git a/PathogenDataCourse/GenomeAssemblyAnnotation.md b/PathogenDataCourse/GenomeAssemblyAnnotation.md index 8da69227f06..6f4e47b9d21 100644 --- a/PathogenDataCourse/GenomeAssemblyAnnotation.md +++ b/PathogenDataCourse/GenomeAssemblyAnnotation.md @@ -88,11 +88,11 @@ Non-coding ## Worksheets ### UNIX shell approaches -[SPAdes for bacterial and viral genome assembly (short reads)](https://conmeehan.github.io/PathogenDataCourse/Worksheets/GenomeAssembly_SPAdes) -[Flye for bacterial and viral genome assembly (Long reads)](https://conmeehan.github.io/PathogenDataCourse/Worksheets/GenomeAssembly_Flye) -[BUSCO and Bandage for genome completeness and quality checking](https://conmeehan.github.io/PathogenDataCourse/Worksheets/GenomeQC_BUSCO_Bandage) -[Bakta for genome annotation](https://conmeehan.github.io/PathogenDataCourse/Worksheets/GenomeAnnotation_Bakta) -[Snippy for reference mapping (SNP calling)](https://conmeehan.github.io/PathogenDataCourse/Worksheets/GenomeMapping_Snippy) +* [SPAdes for bacterial and viral genome assembly (short reads)](https://conmeehan.github.io/PathogenDataCourse/Worksheets/GenomeAssembly_SPAdes) +* [Flye for bacterial and viral genome assembly (Long reads)](https://conmeehan.github.io/PathogenDataCourse/Worksheets/GenomeAssembly_Flye) +* [BUSCO and Bandage for genome completeness and quality checking](https://conmeehan.github.io/PathogenDataCourse/Worksheets/GenomeQC_BUSCO_Bandage) +* [Bakta for genome annotation](https://conmeehan.github.io/PathogenDataCourse/Worksheets/GenomeAnnotation_Bakta) +* [Snippy for reference mapping (SNP calling)](https://conmeehan.github.io/PathogenDataCourse/Worksheets/GenomeMapping_Snippy) ### Galaxy approaches * [Bacterial genome assembly using Galaxy](https://training.galaxyproject.org/training-material/topics/assembly/)