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Merge pull request #318 from dbast/readme
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goanpeca authored Nov 26, 2023
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2 changes: 1 addition & 1 deletion .github/workflows/caching-envs-example.yml
Original file line number Diff line number Diff line change
Expand Up @@ -31,7 +31,7 @@ jobs:
- uses: actions/checkout@v4

- name: Setup Mambaforge
uses: conda-incubator/setup-miniconda@v2
uses: conda-incubator/setup-miniconda@9f54435e0e72c53962ee863144e47a4b094bfd35 # v2.3.0
with:
miniforge-variant: Mambaforge
miniforge-version: latest
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113 changes: 87 additions & 26 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -44,18 +44,20 @@ possibility of automatically activating the `test` environment on all shells.

> Each of the examples below is discussed in a dedicated section below.
| Documentation | Workflow Status |
| ----------------------------------------------- | --------------------------------------------------------------- |
| [Basic usage](#example-1-basic-usage) | [![Basic Usage Status][ex1-badge]][ex1] |
| [Other shells](#example-2-other-shells) | [![Other Shells Status][ex2-badge]][ex2] |
| [Other options](#example-3-other-options) | [![Other Options Status][ex3-badge]][ex3] |
| [Channels](#example-4-conda-options) | [![Channels Status][ex4-badge]][ex4] |
| [Custom installer](#example-5-custom-installer) | [![Custom Installer Status][ex5-badge]][ex5] |
| [Mamba](#example-6-mamba) | [![Mamba Status][ex6-badge]][ex6] |
| [Lockfiles](#example-7-lockfiles) | [![Lockfiles Status][ex7-badge]][ex7] |
| [Miniforge](#example-10-miniforge) | [![Miniforge Status][ex10-badge]][ex10] |
| [Caching packages](#caching-packages) | [![Caching Example Status][caching-badge]][caching] |
| [Caching environments](#caching-environments) | [![Caching Env Example Status][caching-env-badge]][caching-env] |
| Documentation | Workflow Status |
| ------------------------------------------------------------------ | --------------------------------------------------------------- |
| [Basic usage](#example-1-basic-usage) | [![Basic Usage Status][ex1-badge]][ex1] |
| [Other shells](#example-2-other-shells) | [![Other Shells Status][ex2-badge]][ex2] |
| [Other options](#example-3-other-options) | [![Other Options Status][ex3-badge]][ex3] |
| [Channels](#example-4-conda-options) | [![Channels Status][ex4-badge]][ex4] |
| [Custom installer](#example-5-custom-installer) | [![Custom Installer Status][ex5-badge]][ex5] |
| [Mamba](#example-6-mamba) | [![Mamba Status][ex6-badge]][ex6] |
| [Lockfiles](#example-7-lockfiles) | [![Lockfiles Status][ex7-badge]][ex7] |
| [Miniforge](#example-10-miniforge) | [![Miniforge Status][ex10-badge]][ex10] |
| [Alternative Architectures](#example-11-alternative-architectures) | [![Alternative Architectures][ex11-badge]][ex11] |
| [Configure conda solver](#example-12-configure-conda-solver) | [![Configure conda solver][ex12-badge]][ex12] |
| [Caching packages](#caching-packages) | [![Caching Example Status][caching-badge]][caching] |
| [Caching environments](#caching-environments) | [![Caching Env Example Status][caching-env-badge]][caching-env] |

[ex1]:
https://github.com/conda-incubator/setup-miniconda/actions/workflows/example-1.yml
Expand Down Expand Up @@ -97,6 +99,14 @@ possibility of automatically activating the `test` environment on all shells.
https://github.com/conda-incubator/setup-miniconda/actions/workflows/example-10.yml
[ex10-badge]:
https://github.com/conda-incubator/setup-miniconda/actions/workflows/example-10.yml/badge.svg?branch=main
[ex11]:
https://github.com/conda-incubator/setup-miniconda/actions/workflows/example-11.yml
[ex11-badge]:
https://github.com/conda-incubator/setup-miniconda/actions/workflows/example-11.yml/badge.svg?branch=main
[ex12]:
https://github.com/conda-incubator/setup-miniconda/actions/workflows/example-12.yml
[ex12-badge]:
https://github.com/conda-incubator/setup-miniconda/actions/workflows/example-12.yml/badge.svg?branch=main

## Other Workflows

Expand Down Expand Up @@ -298,7 +308,7 @@ jobs:
run:
shell: bash -el {0}
steps:
- uses: actions/checkout@v2
- uses: actions/checkout@v4
- uses: conda-incubator/setup-miniconda@v2
with:
activate-environment: anaconda-client-env
Expand Down Expand Up @@ -330,7 +340,7 @@ jobs:
run:
shell: bash -el {0}
steps:
- uses: actions/checkout@v2
- uses: actions/checkout@v4
- uses: conda-incubator/setup-miniconda@v2
with:
activate-environment: foo
Expand Down Expand Up @@ -372,7 +382,7 @@ jobs:
run:
shell: bash -el {0}
steps:
- uses: actions/checkout@v2
- uses: actions/checkout@v4
- uses: conda-incubator/setup-miniconda@v2
with:
installer-url: https://github.com/conda-forge/miniforge/releases/download/4.8.3-2/Miniforge-pypy3-4.8.3-2-Linux-x86_64.sh
Expand Down Expand Up @@ -404,7 +414,7 @@ jobs:
name: Ex6 Mamba
runs-on: "ubuntu-latest"
steps:
- uses: actions/checkout@v2
- uses: actions/checkout@v4
- uses: conda-incubator/setup-miniconda@v2
with:
python-version: 3.6
Expand Down Expand Up @@ -443,7 +453,7 @@ This means explicitly-defined environments which:
This approach can be useful as part of a larger system e.g., a separate workflow
that runs `conda-lock` for all the platforms needed in a separate job.

[conda-lock]: https://github.com/conda-incubator/conda-lock
[conda-lock]: https://github.com/conda/conda-lock
[explicit-spec]:
https://docs.conda.io/projects/conda/en/latest/user-guide/tasks/manage-environments.html#building-identical-conda-environments

Expand All @@ -456,7 +466,7 @@ jobs:
run:
shell: bash -el {0}
steps:
- uses: actions/checkout@v2
- uses: actions/checkout@v4
- uses: conda-incubator/setup-miniconda@v2
with:
auto-update-conda: false
Expand Down Expand Up @@ -487,7 +497,7 @@ jobs:
matrix:
os: ["ubuntu", "macos", "windows"]
steps:
- uses: actions/checkout@v2
- uses: actions/checkout@v4
- uses: conda-incubator/setup-miniconda@v2
with:
environment-file: etc/example-environment.yml
Expand Down Expand Up @@ -519,7 +529,7 @@ jobs:
condarc-file: etc/example-condarc.yml
miniforge-variant: Mambaforge
steps:
- uses: actions/checkout@v2
- uses: actions/checkout@v4
- uses: conda-incubator/setup-miniconda@v2
with:
condarc-file: ${{ matrix.condarc-file }}
Expand Down Expand Up @@ -549,15 +559,43 @@ jobs:
architecture: ["x86"]
miniconda-version: ["latest"]
steps:
- uses: actions/checkout@v2
- uses: ./
- uses: actions/checkout@v4
- uses: conda-incubator/setup-miniconda@v2
with:
architecture: ${{ matrix.architecture }}
miniconda-version: $${{ matrix.miniconda-version }}
auto-update-conda: true
python-version: "3.8"
```

### Example 12: Configure conda solver

Set the conda solver plugin to use. Only applies to the `conda` client, not
`mamba`. Starting with Miniconda 23.5.2 and Miniforge 23.3.1, you can choose
between `classic` and `libmamba`. Best when combined with
`auto-update-conda: true`.

```yaml
jobs:
example-12:
name: Ex12 (os=${{ matrix.os }} solver=${{ matrix.solver }})
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
solver: ["classic", "libmamba"]
os: ["ubuntu-latest", "windows-latest"]
steps:
- uses: actions/checkout@v4
- uses: conda-incubator/setup-miniconda@v2
id: setup-miniconda
continue-on-error: true
with:
auto-update-conda: true
conda-solver: ${{ matrix.solver }}
python-version: "3.9"
```

## Caching

### Caching packages
Expand All @@ -580,9 +618,9 @@ jobs:
name: Caching
runs-on: "ubuntu-latest"
steps:
- uses: actions/checkout@v2
- uses: actions/checkout@v4
- name: Cache conda
uses: actions/cache@v2
uses: actions/cache@v3
env:
# Increase this value to reset cache if etc/example-environment.yml has not changed
CACHE_NUMBER: 0
Expand Down Expand Up @@ -632,7 +670,7 @@ the "Get Date" step below if you use a resolved environment file product of
shell: bash
- name: Cache Conda env
uses: actions/cache@v2
uses: actions/cache@v3
with:
path: ${{ env.CONDA }}/envs
key:
Expand Down Expand Up @@ -692,7 +730,7 @@ jobs:
run:
shell: bash -el {0}
steps:
- uses: actions/checkout@v2
- uses: actions/checkout@v4
- uses: conda-incubator/setup-miniconda@v2
with:
activate-environment: anaconda-client-env
Expand Down Expand Up @@ -737,6 +775,24 @@ jobs:
defined in `environment.yaml`, otherwise the conda solver might find conflicts
which cause very long install times or install failures.

## Security / Reproducibility

Security and reproducibility is important especially when workflows deal with
secrets. No matter how much individual Github action repositories are secured,
git branches and tags are always mutable. It is thus good practice to:

1. pin the action to a specific sha1 with tag as comment, instead of e.g. using
v2 or v2.2.1 (which are mutable tags):
`uses: conda-incubator/setup-miniconda@9f54435e0e72c53962ee863144e47a4b094bfd35 # v2.3.0`
see
[example](https://github.com/conda-incubator/setup-miniconda/actions/workflows/caching-example.yml)
2. keep the non-human-readable pinning updated to not run behind recent updates
and fixes via automation like
[renovate](https://docs.renovatebot.com/modules/manager/github-actions/) or
[dependabot](https://github.blog/changelog/2022-10-31-dependabot-now-updates-comments-in-github-actions-workflows-referencing-action-versions/)
3. use conda-lock files, see
[conda-lock](https://github.com/conda/conda-lock#why)

## Project History and Contributing

See the
Expand All @@ -745,6 +801,11 @@ for project history, or
[CONTRIBUTING](https://github.com/conda-incubator/setup-miniconda/blob/main/CONTRIBUTING.md)
to get started adding features you need.

## Similar Actions to work with conda packages

- https://github.com/mamba-org/setup-micromamba
- https://github.com/prefix-dev/setup-pixi

## Contributors

Thanks to all the contributors that make this awesome project possible!
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