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236 Open 408 Closed
236 Open 408 Closed
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Issues list

Support of inverse of preprocess_cds bug Something isn't working
#739 opened Oct 22, 2024 by MUCDK
orderCells function fails due to deprecated nei() call** bug Something isn't working
#738 opened Oct 20, 2024 by weissnichtwo
2
ERROR: dependencies ‘sf’, ‘spdep’ are not available for package ‘monocle3’ bug Something isn't working
#737 opened Oct 19, 2024 by xiaoli-gg
3
Installing Monocle3 on my windows laptop bug Something isn't working
#736 opened Sep 27, 2024 by seattlescientist
Installation problem bug Something isn't working
#735 opened Sep 24, 2024 by HSvitina
graph_test error: Error in (function (..., row.names = NULL, check.rows = FALSE, check.names = TRUE, : row names supplied are of the wrong length bug Something isn't working
#733 opened Sep 5, 2024 by alexisweber
export monocle graph
#732 opened Aug 20, 2024 by anke-king
reduce_dimension error : address (nil), cause 'memory not mapped' bug Something isn't working
#731 opened Aug 14, 2024 by Donbbit
Minimum number of transcripts to infer trajectory
#730 opened Aug 6, 2024 by Psrwnsr
When conditioned specific cells are present： bug Something isn't working
#728 opened Jul 8, 2024 by metaspine
Errors to install the monocle3 in Macbook
#727 opened Jul 1, 2024 by mainharryHR
convert_counts_matrix failing with .monoclerc bug Something isn't working
#726 opened Jun 12, 2024 by rfriedman22
Error in h(simpleError(msg, call)) : error in evaluating the argument 'i' in selecting a method for function '[<-': default method not implemented for type 'S4' bug Something isn't working
#725 opened Jun 7, 2024 by chaiepi
5
Issue while downloading Monocle3 package bug Something isn't working
#724 opened May 29, 2024 by isaiao01
1
Monocle 3 batch correction error bug Something isn't working
#722 opened May 20, 2024 by ZFMZSR
Problem installing Monocle3
#721 opened May 16, 2024 by dbeauv
2
As much as I'd like to use monocle3, I can't get it on my system.
#720 opened May 16, 2024 by simon7073
1
monocle3 failed to run graph_test
#719 opened May 11, 2024 by caochch
Cluster_cells : Error in graph.adjacency.dense bug Something isn't working
#718 opened May 10, 2024 by Dooo0k
5
preprocess_cds running for hours
#717 opened Apr 30, 2024 by alicerlam
1
how to read graph_test output of monocle 3
#716 opened Apr 25, 2024 by synatkeamsk
1
Driven by confounders?
#714 opened Apr 18, 2024 by kylagelev
question about "plot_genes_in_pseudotime"
#713 opened Apr 16, 2024 by vgettaa
1
Multiple non-continuous batches with align_cds?
#712 opened Apr 12, 2024 by professor-sagittarius
Trajectory Analysis
#710 opened Apr 9, 2024 by isaiao01
ProTip! Adding no:label will show everything without a label.