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Commits on Apr 5, 2018

• Update README to reflect break with ml-workers

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  patrick-miller

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  dhimmel

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Commits on Sep 26, 2017

• Revise parameter grid (#114)

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  rdvelazquez

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Commits on Sep 21, 2017

• Number of PCA Components to Keep (#113)

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  rdvelazquez

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Commits on Aug 28, 2017

• Change plots to use plotnine (#112)

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  patrick-miller

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  rdvelazquez

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Commits on Aug 24, 2017

• Allow for environment variables in notebook (#111)

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  patrick-miller

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Commits on Jul 28, 2017

• Reference notebook: extract gene weights post PCA (#109)

  

  rdvelazquez

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  dhimmel

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Commits on Jul 14, 2017

• Explore gene expression coefficients from PCA (#105)

  

  rdvelazquez

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  dhimmel

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• README: remove cognoml reference (#107)

  

  rdvelazquez

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Commits on Jun 23, 2017

• Use dask-searchcv in 2.mutation-classifier.ipynb (#104)

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  rdvelazquez

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  dhimmel

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Commits on Jun 21, 2017

• Explicitly specify channels for each package

  dhimmel

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• Set random_state in StratifiedKFold

  dhimmel

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• Rename and doc notebooks

  dhimmel

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• Minor touchups to 2.TCGA-MLexample-covariates.ipynb

  dhimmel

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• Switch READMEs to semantic linefeeds

  dhimmel

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• Update conda environment on 2017-06-18

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  dhimmel

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Commits on Jun 17, 2017

• Transform expression matrix with PCA (#100)

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  patrick-miller

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  dhimmel

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Commits on Jun 12, 2017

• Explore dask-searchCV to optomize GridSearchCV (#101)

  

  rdvelazquez

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  dhimmel

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Commits on Jun 9, 2017

• Move .py file to scripts directory (#102)

  dhimmel

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• Remove temp files from notebook vega ROC plot (#99)

  

  patrick-miller

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Commits on Jun 6, 2017

• Add covariate-only & combined models to main notebook (#93)

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  patrick-miller

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  dhimmel

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Commits on Jun 3, 2017

• Upload an Exploratory PCA Notebook (#95)

  

  rdvelazquez

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  dhimmel

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Commits on Apr 17, 2017

• altair: modify heatmap labels and colormap (#91)

  

  George-Zipperlen

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  dhimmel

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Commits on Feb 20, 2017

• Vega spec for disease-specific AUROC bar plots (#84)

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  patrick-miller

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  dhimmel

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Commits on Feb 17, 2017

• Increase dimensions of Isomap tranformation (#81)

  

  KT12

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Commits on Feb 13, 2017

• Marginal gain of gene expression data over covariates (#67)

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  joshlevy89

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Commits on Feb 2, 2017

• SGD classifier for sparse mutations using PCA and StratifiedShuffleSplit (#71)

  

  htcai

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Commits on Feb 1, 2017

• Create Vega specification for ROC plots (#77)

  

  patrick-miller

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  dhimmel

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Commits on Jan 29, 2017

• Algorithm: Isomap & SGDClassifier (#78)

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  KT12

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  dhimmel

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• Implement sklearn.ensemble.VotingClassifier (#79)

  

  seignour

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  dhimmel

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Commits on Jan 23, 2017

• Altair / vega-lite heatmap of mutation frequency per gene (#74)

  

  superkostya

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  dhimmel

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Commits on Jan 14, 2017

• Reduce dimensionality with random projection (#76)

  

  KT12

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  dhimmel

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Commits on Dec 21, 2016

• Add NearestNeighbors classifier to algorithms (#41)

  

  yigalron

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  dhimmel

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Commits on Dec 14, 2016

• Add Passive Aggressive classifier (#69)

  

  KT12

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  dhimmel

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Commits on Nov 2, 2016

• Remove cognoml package (#65)

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  dhimmel

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Commits on Oct 25, 2016

• Improve pip installation (#62)

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  dhimmel

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