fix: update user file search

codecov_cli/services/upload/file_finder.py

@@ -180,13 +180,13 @@
 class FileFinder(object):
     def __init__(
         self,
-        project_root: Path = None,
+        search_root: Path = None,
         folders_to_ignore: typing.List[str] = None,
         explicitly_listed_files: typing.List[Path] = None,
         disable_search: bool = False,
         report_type: str = "coverage",
     ):
-        self.project_root = project_root or Path(os.getcwd())
+        self.search_root = search_root or Path(os.getcwd())
         self.folders_to_ignore = folders_to_ignore or []
         self.explicitly_listed_files = explicitly_listed_files or None
         self.disable_search = disable_search
@@ -207,7 +207,7 @@ def find_files(self) -> typing.List[UploadCollectionResultFile]:
         if not self.disable_search:
             regex_patterns_to_include = globs_to_regex(files_patterns)
             files_paths = search_files(
-                self.project_root,
+                self.search_root,
                 default_folders_to_ignore + self.folders_to_ignore,
                 filename_include_regex=regex_patterns_to_include,
                 filename_exclude_regex=regex_patterns_to_exclude,
@@ -243,16 +243,17 @@ def get_user_specified_files(self, regex_patterns_to_exclude):
         )
         user_files_paths = list(
             search_files(
-                self.project_root,
-                default_folders_to_ignore + self.folders_to_ignore,
+                self.search_root,
+                self.folders_to_ignore,
                 filename_include_regex=regex_patterns_to_include,
                 filename_exclude_regex=regex_patterns_to_exclude,
                 multipart_include_regex=multipart_include_regex,
             )
         )
         not_found_files = []
+        user_files_paths_resolved = [path.resolve() for path in user_files_paths]
         for filepath in self.explicitly_listed_files:
-            if filepath.resolve() not in user_files_paths:
+            if filepath.resolve() not in user_files_paths_resolved:
                 not_found_files.append(filepath)
 
         if not_found_files:

tests/services/upload/test_coverage_file_finder.py

@@ -179,8 +179,10 @@ def test_find_coverage_files_with_existing_files(self):
             self.project_root / "coverage.xml",
             self.project_root / "subdirectory" / "test_coverage.xml",
             self.project_root / "other_file.txt",
+            self.project_root / ".tox" / "another_file.abc",
         ]
         (self.project_root / "subdirectory").mkdir()
+        (self.project_root / ".tox").mkdir()
         for file in coverage_files:
             file.touch()
 
@@ -208,8 +210,10 @@ def test_find_coverage_files_with_disabled_search(self):
             self.project_root / "subdirectory" / "another_file.abc",
             self.project_root / "subdirectory" / "test_coverage.xml",
             self.project_root / "other_file.txt",
+            self.project_root / ".tox" / "another_file.abc",
         ]
         (self.project_root / "subdirectory").mkdir()
+        (self.project_root / ".tox").mkdir()
         for file in coverage_files:
             file.touch()
 
@@ -237,8 +241,10 @@ def test_find_coverage_files_with_user_specified_files(self):
             self.project_root / "subdirectory" / "test_coverage.xml",
             self.project_root / "test_file.abc",
             self.project_root / "subdirectory" / "another_file.abc",
+            self.project_root / ".tox" / "another_file.abc",
         ]
         (self.project_root / "subdirectory").mkdir()
+        (self.project_root / ".tox").mkdir()
         for file in coverage_files:
             file.touch()
 
@@ -264,8 +270,10 @@ def test_find_coverage_files_with_user_specified_files_not_found(self):
         coverage_files = [
             self.project_root / "coverage.xml",
             self.project_root / "subdirectory" / "test_coverage.xml",
+            self.project_root / ".tox" / "another_file.abc",
         ]
         (self.project_root / "subdirectory").mkdir()
+        (self.project_root / ".tox").mkdir()
         for file in coverage_files:
             file.touch()
 
@@ -286,3 +294,36 @@ def test_find_coverage_files_with_user_specified_files_not_found(self):
         ]
         expected_paths = sorted([file.get_filename() for file in expected])
         self.assertEqual(result, expected_paths)
+
+    def test_find_coverage_files_with_user_specified_files_in_default_ignored_folder(self):
+        # Create some sample coverage files
+        coverage_files = [
+            self.project_root / "coverage.xml",
+            self.project_root / "subdirectory" / "test_coverage.xml",
+            self.project_root / "test_file.abc",
+            self.project_root / "subdirectory" / "another_file.abc",
+            self.project_root / ".tox" / "another_file.abc",
+        ]
+        (self.project_root / "subdirectory").mkdir()
+        (self.project_root / ".tox").mkdir()
+        for file in coverage_files:
+            file.touch()
+
+        self.coverage_file_finder.explicitly_listed_files = [
+            self.project_root / ".tox" / "another_file.abc",
+        ]
+        result = sorted(
+            [file.get_filename() for file in self.coverage_file_finder.find_files()]
+        )
+
+        expected = [
+            UploadCollectionResultFile(Path(f"{self.project_root}/coverage.xml")),
+            UploadCollectionResultFile(
+                Path(f"{self.project_root}/subdirectory/test_coverage.xml")
+            ),
+            UploadCollectionResultFile(
+                Path(f"{self.project_root}/.tox/another_file.abc")
+            ),
+        ]
+        expected_paths = sorted([file.get_filename() for file in expected])
+        self.assertEqual(result, expected_paths)