globplot-fix_biopython.diff

9c9
< from Bio import Fasta
---
> from Bio import SeqIO
102c102
<     SG_bin = 'PATH/GlobPipe-2.2/sav_gol -V0 '
---
>     SG_bin = 'sav_gol -V0 '
173,174c173
<     parser = Fasta.RecordParser()
<     iterator = Fasta.Iterator(db,parser)
---
>     iterator = SeqIO.parse(file, "fasta")
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<             seq = upper(cur_record.sequence)
---
>             seq = upper(cur_record.seq)
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<             sys.stdout.write('>'+cur_record.title+coordstrDOM+coordstrDIS+'\n')
---
>             sys.stdout.write('>'+cur_record.id+coordstrDOM+coordstrDIS+'\n')
209c208,210
<         except AttributeError:
---
>         except StopIteration:
>             break
>         except AttributeError, e: