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Commits on Mar 11, 2026

• input doc update

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• rename data preparation to input docs

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• add water_model argument

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Commits on Mar 10, 2026

• 0.5.1 changelog update

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• correct license place in readme

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• add --salt_concentration and --ion_pname, --ion_nname arguments

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Commits on Feb 13, 2026

• update logo

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• update ff choice doc example

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• add more ff choice examples

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• add ff change example

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• version 0.5

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• box_padding_nm and box_type argument #38

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Commits on Jan 29, 2026

• update instructions.txt

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Commits on Jan 27, 2026

• Update instructions.txt

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Commits on Jan 23, 2026

• update readme apptainer info

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• update readme apptainer info

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• update wget install files readme

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• update wget install files

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Commits on Jan 21, 2026

• update streamd pip version to 0.4.1

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• update prolif readme info

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• uodate mmgbsa docs info

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• uodate prolif and mmgbsa docs info

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• uodate prolif and mmgbsa info

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Commits on Jan 7, 2026

• update info about sif images to readme

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• update info about sif images to readme

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• add info about sif images to readme

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• fix here-strings in the code #79

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• fix issue with here-strings #79

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• fix bug no tpr or xtc when continue interrupted run

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Commits on Dec 27, 2025

• update streamd readme description

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• fix inter-docs configuration file link in running_md.md

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• fix inter-docs link in running_md.md

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• update configuration file section docs section

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• update output docs section

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• update trajectory_convergence.md docs section names

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