Hifiasm-0.11 (r302)

1. Fixed bug for trio-binning assembly.

Hifiasm-0.10 (r299)

1. Improved assembly completeness, especially for trio-binning assembly.
2. Incorporated the option '--high-het' for high heterozygosity sample. Note this option is experimental for now and will increase running time.

Hifiasm-0.9 (r289)

1. Reduced mis-assemblies by using coverage information.
2. Improved assembly completeness.

Hifiasm-0.8 (r279)

Fixed a bug that causes missing overlaps.

0.7.0

Changes since the last release:

1. Fixed several bugs for trio-binning. The completeness has been improved, and the switch error has been reduced.

0.6.0

Changes since the last release:

1. Added options for Purge_dups.
2. Disabled Purge_dups for trio-binning in default.

0.5.0

Changes since the last release:

1. Fixed mis-assemblies.
2. Changed the default rounds of haplotype-aware error corrections to 3 (-r).

0.4.0

Changes since the last release:

1. Improved N50 for primary assembly significantly.
2. Hifiasm is able to generate primary assembly with right size.
3. Reduced running time. This release is 50% faster than the last release.
4. Changed the name of binary files from prefix.ovlp.bin, prefix.ovlp.reverse.bin, prefix.ovlp.source.bin
   to prefix.ec.bin, prefix.ovlp.reverse.bin, prefix.ovlp.source.bin.
5. For trio binning, changed the name of phased assemblies to prefix.hap1.p_ctg.gfa/prefix.hap2.p_ctg.gfa.
6. For trio binning, changed option -P and -M to -1 and -2, respectively.
7. Added option -w, -f, -3 and -4.

0.3

Changes since the last release:

1. Dramatically improved N50 for contig graph.
2. Improved base accuracy.
3. Hifiasm-0.3 can support trio-assembly.

0.2.0

Changes since the last release:

1. Bugfix: fix three potential segmentation faults
2. Slightly improved N50 for contig graphs (*.p_ctg.gfa)