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Commits on Feb 5, 2025

• Merge pull request #147 from phaverty-ginkgo/suppress_regex_warning

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Commits on Feb 4, 2025

• Suppress warning about invalid excape sequence

  phaverty-ginkgo

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Commits on Jan 29, 2024

• Version bump: bcbio-gff-v0.7.1

  chapmanb

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• Do not smother Biopython deprecation warnings. Fixes #139

  chapmanb

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• Merge pull request #141 from fubar2/master

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  chapmanb

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• Merge pull request #135 from timgates42/bugfix_typos

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  chapmanb

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Commits on Jan 2, 2024

• updates for biopython 1.86

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Commits on Mar 13, 2023

• Merge pull request #137 from abretaud/unknownseq

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  chapmanb

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Commits on Feb 15, 2023

• Fix error with biopython 1.81

  abretaud

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Commits on Jul 19, 2022

• docs: Fix a few typos

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  timgates42

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Commits on Nov 18, 2021

• v0.6.9: fix ID matching when no rec.id fixes #134

  chapmanb

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Commits on Nov 3, 2021

• v0.6.8: match records between fasta and GFF with NCBI style headers

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  chapmanb

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Commits on Oct 6, 2021

• v0.6.7: handle problem sequence-region directives without contigs

  chapmanb

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• GFF to Genbank: support latest biopython without alphabets

  chapmanb

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Commits on Jun 8, 2021

• Merge pull request #133 from peterjc/patch-1

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  chapmanb

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Commits on Jun 3, 2021

• Support zero length reads in FakeHandle

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  peterjc

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Commits on Feb 12, 2020

• Merge pull request #129 from sergiuser1/patch-1

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  chapmanb

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Commits on Feb 10, 2020

• Add license to setup.py

  sergiuser1

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Commits on Jul 9, 2019

• Merge pull request #127 from tipabu/py3-binary-mode

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  chapmanb

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Commits on Jul 8, 2019

• Fix tests on py2

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  tipabu

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• py3: raise TypeError on binary file handle

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Commits on Jun 19, 2019

• Merge pull request #126 from DavyCats/dc_gffparser_fix_crash_on_gene_line

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  roryk

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• fix crashes when parsing gtf files which contain gene lines

  DavyCats

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Commits on Mar 28, 2019

• Ginkgo data talk: finalize and improve after practice

  chapmanb

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• Merge pull request #124 from rhpvorderman/patch-1

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  chapmanb

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Commits on Mar 27, 2019

• Ginkgo data work in progress for BIG meeting

  chapmanb

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• Add biopython dependency

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  rhpvorderman

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Commits on Mar 17, 2019

• v0.6.6: fix for LICENSE file install bioconda/bioconda-recipes#13873

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Commits on Mar 14, 2019

• Glimmer: ensure have Bio.Seq for reverse complement

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  chapmanb

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Commits on Mar 12, 2019

• Python 3 compatibility: reduce #123

  chapmanb

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Commits on Mar 10, 2019

• Avoid reduce errors with missing exon sequence. Fixes #123

  chapmanb

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Commits on Mar 5, 2019

• Merge pull request #122 from dfornika/patch-1

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  chapmanb

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Commits on Mar 3, 2019

• Add LICENSE file to Manifest.in

  dfornika

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Commits on Mar 1, 2019

• Recommendations for variant calling and bcbio CWL runs

  chapmanb

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Commits on Feb 11, 2019

• Bcbio GFF v0.6.5: Python 3 compatibility; fixes #120

  chapmanb

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