push_tests.yml

name: Push Tests

on:
  push:
    branches: main
  pull_request:
    branches: "*"

env:
  JEST_ENV: prod
  CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}

jobs:
  lint:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v2
      - run: |
          git fetch --depth=1 origin +${{github.base_ref}}
      - name: Set up Python 3.9
        uses: actions/setup-python@v4
        with:
          python-version: 3.9
      - name: Node cache
        uses: actions/cache@v1
        with:
          path: ~/.npm
          key: ${{ runner.os }}-node-${{ hashFiles('**/package-lock.json') }}
          restore-keys: |
            ${{ runner.os }}-node-
      - name: Install dependencies
        run: |
          pip install flake8
          pip install black
          cd client
          npm install
      - name: Format with black and lint with flake8
        run: |
          make lint-server
      - name: Lint src with eslint
        working-directory: ./client
        run: |
          npx eslint src __tests__

  unit-test:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v2
      - name: Set up Python 3.9 (pyenv) # pyenv needed for mlflow in cli annotate tests
        uses: gabrielfalcao/pyenv-action@v9
        with:
          default: 3.9
          command: pip install -U pip # upgrade pip after installing python
      - run: pip install virtualenv # virtualenv needed for mlflow in cli annotate tests
      - name: Python cache
        uses: actions/cache@v1
        with:
          path: ~/.cache/pip
          key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements*.txt') }}
          restore-keys: |
            ${{ runner.os }}-pip-
      - name: Node cache
        uses: actions/cache@v1
        with:
          path: ~/.npm
          key: ${{ runner.os }}-node-${{ hashFiles('**/package-lock.json') }}
          restore-keys: |
            ${{ runner.os }}-node-
      - name: Install dependencies
        run: make pydist install-dist dev-env-server
      - name: Unit tests
        run: |
          make unit-test-server unit-test-client
          bash <(curl -s https://codecov.io/bash) -y .codecov.yml -k server -cF server,python,unitTest
          cd client && ./node_modules/codecov/bin/codecov --yml=../.codecov.yml --root=../ --gcov-root=../ -C -F frontend,javascript,unitTest

  smoke-tests:
    runs-on: macos-latest
    timeout-minutes: 20
    steps:
      - uses: actions/checkout@v2
      - name: Set up Python 3.9
        uses: actions/setup-python@v4
        with:
          python-version: 3.9
      - name: Python cache
        uses: actions/cache@v1
        with:
          path: ~/.cache/pip
          key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements*.txt') }}
          restore-keys: |
            ${{ runner.os }}-pip-
      - name: Node cache
        uses: actions/cache@v1
        with:
          path: ~/.npm
          key: ${{ runner.os }}-node-${{ hashFiles('**/package-lock.json') }}
          restore-keys: |
            ${{ runner.os }}-node-
      - name: Install dependencies
        run: make pydist install-dist
      - name: Smoke tests (without annotations feature)
        run: |
          cd client && make smoke-test
          ./node_modules/codecov/bin/codecov --yml=../.codecov.yml --root=../ --gcov-root=../ -C -F frontend,javascript,smokeTest

  # TODO: reinstate: https://github.com/chanzuckerberg/cellxgene/issues/2544
  # smoke-tests-annotations:
  #   runs-on: ubuntu-latest
  #   timeout-minutes: 20
  #   steps:
  #     - uses: actions/checkout@v2
  #     - name: Set up Python 3.9
  #       uses: actions/setup-python@v4
  #       with:
  #         python-version: 3.9
  #     - name: Python cache
  #       uses: actions/cache@v1
  #       with:
  #         path: ~/.cache/pip
  #         key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements*.txt') }}
  #         restore-keys: |
  #           ${{ runner.os }}-pip-
  #     - name: Node cache
  #       uses: actions/cache@v1
  #       with:
  #         path: ~/.npm
  #         key: ${{ runner.os }}-node-${{ hashFiles('**/package-lock.json') }}
  #         restore-keys: |
  #           ${{ runner.os }}-node-
  #     - name: Install dependencies
  #       run: make pydist install-dist
  #     - name: Smoke tests (with annotations feature)
  #       run: |
  #         cd client && make smoke-test-annotations
  #         ./node_modules/codecov/bin/codecov --yml=../.codecov.yml --root=../ --gcov-root=../ -C -F frontend,javascript,smokeTestAnnotations