NOISYmputer_Python

This is a repository of the implementation of NOISYmputer algorithm created by Lorieux et al., (2019) in Python programming language

Requirements:

• Python 3. -Modules:
  • -numpy
  • -pandas
  • -subprocess
  • -re
  • -os
  • -gc
• Java virtual machine.
• a VCF file representing a high quality sequencing approach and an accurated design experiment.
• define a population type of the following options:
  • f2_intercross
  • f2_backcross
  • doubled_haploid
  • ri_self
  • ri_intermat

References:

[1] https://www.biorxiv.org/content/10.1101/658237v1