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@ccb-hms

Core for Computational Biomedicine

Harvard Medical School

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  1. ontology-mapper ontology-mapper Public

    a tool for mapping free-text descriptions of entities to ontology terms

    Python 23 4

  2. scDiagnostics scDiagnostics Public

    Diagnostic functions to assess the quality of cell type annotations in single-cell RNA sequencing data

    R 9 2

  3. BioPlex BioPlex Public

    R-side access to protein-protein interaction data from Gygi and Harper labs

    R 7 2

  4. nhanes-database nhanes-database Public

    Database facilities for performant working with CDC's National Health and Nutrition Examination Survey (NHANES) data

    R 6 5

  5. HuBMAPy HuBMAPy Public

    A package to query the HuBMAP Human Reference Atlas Ontology

    Python 1 3

  6. MerfishData MerfishData Public

    Collection of public MERFISH datasets

    R 1 2

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