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README.md

Kubernetes Version of caMicroscope and quip

Note that the images persistent volume starts empty. Please replace emptyDir with an alternate source if required.

develop and caMicroscope

run kubectl apply -f develop.yml to create, cleanup.sh to remove everything when done.

When using minikube, run minikube tunnel then minikube service back --url to get the url.

For instances where security is enabled, after generating keys in 'jwt_keys' and confiuring login.html, run camicroscope_add_config.sh or some modification thereof as needed for your configuration.

quip

  • Setup required configuration by running pathdb_add_config.sh
  • Change the persistent volume configuration in quip-pathdb.yml to match where your slide and other data files are.
  • Run kubectl apply -f quip-pathdb.yml to create the pod
  • When using minikube, run minikube tunnel then minikube service pathdb --url to get the url.