compute_msd for multiple groups #753
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EsmeeBerger
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I know this feature is highly desired, but unfortunately it is not available yet. Currently the best way is to use two separate runs:
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I understand, thank you for the response! |
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I would like to perform a MSD calculation for multiple groups during the same run. I have two atom types in my system, and I have defined a grouping method with one group for each atom type.
I tried putting the
compute_msd
keyword twice in the run.in file, like this (of course with some values for the sample interval and Nc):compute_msd <sample_interval> <Nc> group 0 0
compute_msd <sample_interval> <Nc> group 0 1
but this only yields one msd.out file containing one MSD calculation.
I have also tried giving two groups at once for a single
compute_msd
keyword, like this:compute_msd <sample_interval> <Nc> group 0 0 group 0 1
but it resulted in a syntax error.
Is it possible to compute the MSD for multiple groups during one MD simulation?
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