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How do I perform ssGSEA on single cell RNA seq data when it has already been preprocessed in Seurat version v5? #29

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Saumya513 opened this issue Dec 26, 2023 · 0 comments
Open

How do I perform ssGSEA on single cell RNA seq data when it has already been preprocessed in Seurat version v5? #29

Saumya513 opened this issue Dec 26, 2023 · 0 comments

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@Saumya513
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I have scRNA seq data for knockout and wildtype cells. I have already run made umap clusters using the Seurat pipeline. I wish to perform ssGSEA after that. How do I go about it?

Thank you for any help!
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