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Commit f670037

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remove manage command
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3 files changed

+2
-225
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3 files changed

+2
-225
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seqr/management/commands/load_rna_seq.py

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This file was deleted.

seqr/management/tests/load_rna_seq_tests.py

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This file was deleted.

seqr/views/utils/dataset_utils.py

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@@ -321,6 +321,7 @@ def _get_splice_id(row):
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}
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# TODO
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def load_rna_seq(data_type, *args, **kwargs):
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config = RNA_DATA_TYPE_CONFIGS[data_type]
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return _load_rna_seq(config['model_class'], config['data_type'], *args, config['columns'], **config['additional_kwargs'], **kwargs)
@@ -526,6 +527,7 @@ def _load_rna_seq(model_cls, data_type, file_path, save_data, *args, user=None,
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return sample_guid_keys_to_load, info, warnings
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# TODO
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def post_process_rna_data(sample_guid, data, get_unique_key=None, format_fields=None):
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mismatches = set()
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invalid_format_fields = defaultdict(set)

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