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lines changed Original file line number Diff line number Diff line change @@ -6,8 +6,9 @@ You are strongly encouraged to use the latest release of Cromwell whenever possi
66Cromwell is distributed as a conda package on [ conda-forge] ( https://conda-forge.org/ ) .
77These instructions need to be followed for [ installing the miniconda distribution] ( https://docs.conda.io/en/latest/miniconda.html ) and
88[ activating the conda-forge channel] ( https://conda-forge.org/#about ) . After this Cromwell can be installed in the
9- base environment with ` conda install cromwell ` or a separate environment for Cromwell can be created with
10- ` conda create -n cromwell cromwell ` . If you are using Cromwell for bioinformatics workflows, you might like to take
9+ base environment with ` conda install -c conda-forge cromwell ` or a separate environment for Cromwell can be created with
10+ ` conda create -n cromwell cromwell ` (be sure to activate the conda-forge channel first).
11+ If you are using Cromwell for bioinformatics workflows, you might like to take
1112a look at [ bioconda] ( http://bioconda.github.io ) as well.
1213The conda installation of Cromwell comes with a wrapper that locates the jar for you and allows for running Cromwell or Womtool with a
1314` cromwell run ` , ` womtool validate ` or other command. Conda also installs the required Java dependency
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55* A Unix-based operating system (yes, that includes Mac!)
66* A Java 11 runtime environment
7- * You can see what you have by running `$ java -version` on a terminal.
8- * If not, you can download Java [here](https://adoptopenjdk.net/).
9- * You might need to update the `export JAVA_HOME` in your bash profile to point to your JAVA install location.
7+ * You can see what you have by running ` $ java -version ` on a terminal.
8+ * If not, consider installing via conda or brew [ as explained here] ( ../Releases.md ) .
9+ * We recommend [ SDKMAN] ( https://sdkman.io/install ) to install the latest 11 build of [ Temurin] ( https://adoptium.net/temurin/releases/?version=11 )
10+ * ` sdk install java 11.0.16-tem ` as of the time of this writing
11+ * You might need to update the ` export JAVA_HOME ` in your bash profile to point to your JAVA install location.
1012* A sense of adventure!
1113
1214### Goals
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