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Commits on Dec 2, 2015

• Merge pull request #216 from armish/handle-empty-columns

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• handle empty sample columns better

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Commits on Nov 13, 2015

• Merge pull request #212 from alexjironkin/master

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• Additional switch to pre-compiled re patter.

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Commits on Nov 12, 2015

• Merge pull request #215 from Redmar-van-den-Berg/issue214

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• Resolved issue214 by adding '*' to the allowed characters

  

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• Added vcf and testcases to demonstrate issue214

  

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Commits on Oct 23, 2015

• Precopiled patterns for improved performance.

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Commits on Oct 8, 2015

• Merge pull request #211 from jamescasbon/parse-meta-line

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• More robust parsing of meta-information lines

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Commits on Sep 15, 2015

• Merge pull request #209 from jamescasbon/issue-201

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• Configurable encoding reading compressed VCF files

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Commits on Sep 14, 2015

• Merge pull request #207 from hdashnow/patch-1

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• Merge pull request #203 from mattions/bump_to_dev

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Commits on Aug 21, 2015

• Chang self.data comment. It returns namedtuple not dict

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Commits on Jul 24, 2015

• Bump the version to development mode

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Commits on Apr 19, 2015

• Enable compression to be disabled for .gz filenames

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Commits on Mar 14, 2015

• Merge pull request #195 from martijnvermaat/metadata-whitespace

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• Allow for whitespace after commas in metadata lines

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Commits on Feb 16, 2015

• Merge pull request #190 from chapmanb/master

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• Support ##contig headers with only ID attributes. Generated by bcftools 1.2 when inputs have no ##contig information

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Commits on Nov 10, 2014

• Blacklist pysam 0.8.0 in unit tests (fails on Python 3)

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Commits on Oct 27, 2014

• Merge pull request #186 from davecap/fix-double-quoting-writer

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Commits on Oct 24, 2014

• fix double quoting issue when writing VCFs

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Commits on Oct 10, 2014

• Tolerate equals sign in INFO field value

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Commits on Sep 19, 2014

• Merge pull request #179 from amwenger/amw-uncalled-genotypes-support

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Commits on Sep 17, 2014

• Simplify _format_sample logic

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• Add support for uncalled genotypes

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• Close file handles in TestUncalledGenotypes tests

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• Add test cases for uncalled genotypes support

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Commits on Sep 13, 2014

• Add Python 3.4 trove classifier

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Commits on Sep 9, 2014

• Merge pull request #178 from gotgenes/feature-test_python_3.4

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• Merge pull request #177 from gotgenes/bugfix-snps_with_n

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• Run tests for Python 3.4.

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• Bugfix: SNP records with N as ALT now noted as SNPs.

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