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test_latest.yml
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name: Test against latest dependencies
on:
schedule:
- cron: '25 5 * * SUN'
workflow_dispatch:
jobs:
get_python_versions:
name: "Determine Python versions"
runs-on: ubuntu-latest
outputs:
min-python: ${{ steps.nep29.outputs.min-python }}
max-python: ${{ steps.nep29.outputs.max-python }}
steps:
- name: "calculate versions according to NEP29"
id: nep29
uses: mstimberg/github-calc-nep29@v0.7
with:
include-release-candidates: true
include-beta-releases: true
token: ${{ secrets.GITHUB_TOKEN }}
testing:
needs: [get_python_versions]
name: "Python ${{ matrix.python-version }} on ${{ matrix.os.image }} (standalone: ${{ matrix.standalone }}, 32bit: ${{ matrix.float_dtype_32 }})"
runs-on: ${{ matrix.os.image }}
strategy:
fail-fast: false
matrix:
os: [{image: ubuntu-latest, triplet: x64-linux},
{image: windows-latest, triplet: x64-windows},
{image: macOS-12, triplet: x64-osx},
{image: macOS-14, triplet: arm64-osx}]
standalone: [false, true]
float_dtype_32: [false, true]
python-version: ["${{ needs.get_python_versions.outputs.max-python }}"]
steps:
- name: Checkout Repository
uses: actions/checkout@v4
with:
fetch-depth: 0
- name: Install GSL
uses: johnwason/vcpkg-action@v6
id: vcpkg
with:
pkgs: gsl
triplet: ${{ matrix.os.triplet }}
cache-key: gsl-${{ matrix.os.triplet }}
revision: master
token: ${{ github.token }}
- name: Set GSL preference for vcpkg
shell: bash
run: |
mkdir ~/.brian/
# Replaces backslashes with forward slashes
echo "GSL.directory=\"${{ github.workspace }}\\vcpkg\\installed\${{ matrix.os.triplet }}\\include"\" | tr '\\' '/' > ~/.brian/user_preferences
cat ~/.brian/user_preferences
- name: Install Python
id: python
uses: actions/setup-python@v5
with:
cache: 'pip'
python-version: ${{ matrix.python-version }}
allow-prereleases: true
- name: Install dependencies
run: |
${{ steps.python.outputs.python-path }} -m pip install --upgrade pip setuptools
${{ steps.python.outputs.python-path }} -m pip install --pre -i https://pypi.anaconda.org/scientific-python-nightly-wheels/simple numpy scipy
${{ steps.python.outputs.python-path }} -m pip install mpmath # install stable version
${{ steps.python.outputs.python-path }} -m pip install --pre pytest pytest-xdist pytest-cov pytest-timeout cython sympy pyparsing jinja2 sphinx
- name: Install Brian2
run: |
cp numpy2.pyproject.toml pyproject.toml
${{ steps.python.outputs.python-path }} -m pip install --pre -i https://pypi.anaconda.org/scientific-python-nightly-wheels/simple --extra-index-url https://pypi.org/simple .
- name: Run Tests
run: |
cd ${{ github.workspace }}/.. # move out of the workspace to avoid direct import
${{ steps.python.outputs.python-path }} -Wd ${{ github.workspace }}/dev/continuous-integration/run_test_suite.py
env:
AGENT_OS: ${{runner.os}}
STANDALONE: ${{ matrix.standalone }}
FLOAT_DTYPE_32: ${{ matrix.float_dtype_32 }}
DO_NOT_RESET_PREFERENCES: true # Make sure that GSL setting is used
test-deprecations:
needs: [ get_python_versions ]
name: "Python ${{ matrix.python-version }} check for deprecation warnings on (standalone: ${{ matrix.standalone }}"
runs-on: ubuntu-latest
strategy:
fail-fast: false
matrix:
standalone: [ false, true ]
python-version: [ "${{ needs.get_python_versions.outputs.max-python }}" ]
steps:
- name: Checkout Repository
uses: actions/checkout@v4
with:
fetch-depth: 0
- name: Install GSL
uses: johnwason/vcpkg-action@v6
id: vcpkg
with:
pkgs: gsl
triplet: x64-linux
cache-key: gsl-x64-linux
revision: master
token: ${{ github.token }}
- name: Install Python
id: python
uses: actions/setup-python@v5
with:
cache: 'pip'
python-version: ${{ matrix.python-version }}
allow-prereleases: true
- name: Install dependencies
run: |
${{ steps.python.outputs.python-path }} -m pip install --upgrade pip setuptools
${{ steps.python.outputs.python-path }} -m pip install --pre -i https://pypi.anaconda.org/scientific-python-nightly-wheels/simple numpy scipy
${{ steps.python.outputs.python-path }} -m pip install --pre pytest cython sympy pyparsing jinja2 sphinx
- name: Install Brian2
run: ${{ steps.python.outputs.python-path }} -m pip install --pre -i https://pypi.anaconda.org/scientific-python-nightly-wheels/simple --extra-index-url https://pypi.org/simple .
- name: Determine Cython cache dir
id: cython-cache
run: |
CACHE_DIR=$(python -c 'import os; from Cython.Utils import get_cython_cache_dir; print(os.path.join(get_cython_cache_dir(), "brian_extensions"))')
echo "Cython cache dir: $CACHE_DIR"
echo "cachedir=$CACHE_DIR" >> "$GITHUB_OUTPUT"
- name: restore Cython cache
uses: actions/cache@v4
if: ${{ ! matrix.standalone }}
with:
key: cython-extensions-latest-${{ matrix.os }}-${{ matrix.python-version }}-32bit-${{ matrix.float_dtype_32 }}
path: ${{ steps.cython-cache.outputs.cachedir }}
- name: Run Tests
run: |
cd ${{ github.workspace }}/.. # move out of the workspace to avoid direct import
${{ steps.python.outputs.python-path }} -Wd ${{ github.workspace }}/dev/continuous-integration/run_test_suite.py || echo "Tests failed (but not marked as failed on GA)"
env:
DEPRECATION_ERROR: true
AGENT_OS: linux
STANDALONE: ${{ matrix.standalone }}