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OpenJul 18, 2026
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•Last updated Deferred to v2: the XAI suite (ProtXplain-scoped) + interactive/structural viz, and any breaking/default changes (semver-strict).
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Feature attribution methods (CPP + model-based)
prio:3Still importantStill importanttopic:XAIExplainability methods integrated into AAanalysisExplainability methods integrated into AAanalysistype:featureImplementation of featureImplementation of featureStatus: Open.#47 In breimanntools/aaanalysis;Concept-based explanations (CPP → biology)
prio:3Still importantStill importanttopic:XAIExplainability methods integrated into AAanalysisExplainability methods integrated into AAanalysistype:featureImplementation of featureImplementation of featureStatus: Open.#48 In breimanntools/aaanalysis;Example-based explanations (prototypes + counterfactuals)
prio:3Still importantStill importanttopic:XAIExplainability methods integrated into AAanalysisExplainability methods integrated into AAanalysistype:featureImplementation of featureImplementation of featureStatus: Open.#49 In breimanntools/aaanalysis;Rule extraction methods
prio:3Still importantStill importanttopic:XAIExplainability methods integrated into AAanalysisExplainability methods integrated into AAanalysistype:featureImplementation of featureImplementation of featureStatus: Open.#50 In breimanntools/aaanalysis;Neural XAI methods (deep learning)
prio:3Still importantStill importanttopic:XAIExplainability methods integrated into AAanalysisExplainability methods integrated into AAanalysistype:featureImplementation of featureImplementation of featureStatus: Open.#51 In breimanntools/aaanalysis;Surrogate models (global understanding)
prio:3Still importantStill importanttopic:XAIExplainability methods integrated into AAanalysisExplainability methods integrated into AAanalysistype:featureImplementation of featureImplementation of featureStatus: Open.#52 In breimanntools/aaanalysis;Uncertainty-aware XAI (robustness)
prio:3Still importantStill importanttopic:XAIExplainability methods integrated into AAanalysisExplainability methods integrated into AAanalysistype:featureImplementation of featureImplementation of featureStatus: Open.#53 In breimanntools/aaanalysis;Causal XAI (intervention-based biology)
prio:3Still importantStill importanttopic:XAIExplainability methods integrated into AAanalysisExplainability methods integrated into AAanalysistype:featureImplementation of featureImplementation of featureStatus: Open.#54 In breimanntools/aaanalysis;XAI evaluation framework (scientific validation)
prio:3Still importantStill importanttopic:XAIExplainability methods integrated into AAanalysisExplainability methods integrated into AAanalysistype:featureImplementation of featureImplementation of featureStatus: Open.#55 In breimanntools/aaanalysis;Time resolution prediction
prio:3Still importantStill importanttopic:coreCore featuresCore featurestype:featureImplementation of featureImplementation of featureStatus: Open.#44 In breimanntools/aaanalysis;Explore symbolic-regression surrogate for interpretable model-fitness rules (XAI)
prio:3Still importantStill importanttopic:XAIExplainability methods integrated into AAanalysisExplainability methods integrated into AAanalysistype:featureImplementation of featureImplementation of featureStatus: Open.#265 In breimanntools/aaanalysis;[Potential] Add dataset-shift / drift diagnostics (reference vs target distributions)
prio:3Still importantStill importanttopic:coreCore featuresCore featurestype:featureImplementation of featureImplementation of featureStatus: Open.#495 In breimanntools/aaanalysis;[Potential] Add a scientific lineage graph (dataset to features to model to explanation to design)
prio:3Still importantStill importanttopic:coreCore featuresCore featurestype:featureImplementation of featureImplementation of featureStatus: Open.#496 In breimanntools/aaanalysis;[Potential] Add an experimental-feedback result schema (predicted candidate to assay outcome)
prio:3Still importantStill importanttopic:dataData related improvementsData related improvementstype:featureImplementation of featureImplementation of featureStatus: Open.#497 In breimanntools/aaanalysis;[Potential] Add cross-modal explanation alignment (CPP / PLM / structure / conservation)
prio:3Still importantStill importanttopic:XAIExplainability methods integrated into AAanalysisExplainability methods integrated into AAanalysistype:featureImplementation of featureImplementation of featureStatus: Open.#498 In breimanntools/aaanalysis;epic: v2 unified architecture (TaskSpec/DataSpec, typed result objects, namespaces, migration tooling)
prio:3Still importantStill importanttopic:coreCore featuresCore featurestype:featureImplementation of featureImplementation of featureStatus: Open.#499 In breimanntools/aaanalysis;