Remove package part from links in doc strings, they prevent CRAN submission

Author: sbrockhaus

R/FDboost.R

@@ -178,9 +178,8 @@
 #' \code{\link{plot.FDboost}} methods are available. 
 #' The methods of \code{\link{mboost}} are available as well, 
 #' e.g., \code{\link[mboost:methods]{extract}}. 
-#' 
 #' The \code{FDboost}-object is a named list containing: 
-#' \item{...}{all elements of an \code{mboost}-object
+#' \item{...}{all elements of an \code{mboost}-object}
 #' \item{yname}{the name of the response}
 #' \item{ydim}{dimension of the response matrix, if the response is represented as such}
 #' \item{yind}{the observation (time-)points of the response, i.e. the evaluation points, 

R/FDboostLSS.R

@@ -170,29 +170,26 @@ FDboostLSS <- function(formula, timeformula, data = list(), families = GaussianL
 #' defaults to 25 bootstrap samples, resampling whole curves  
 #' @param grid defaults to a grid up to the current number of boosting iterations. 
 #' The default generates the grid according to the defaults of 
-#' \code{\link[gamboostLSS:cvrisk.mboostLSS]{cvrisk.mboostLSS}} and 
-#' \code{\link[gamboostLSS:cvrisk.mboostLSS]{cvrisk.nc_mboostLSS}} for
-#' models with cyclic or noncyclic fitting.  
-#' @param papply (parallel) apply function, defaults to \code{\link[parallel]{mclapply}}, 
-#' see \code{\link[gamboostLSS:cvrisk.mboostLSS]{cvrisk.mboostLSS}} for details.  
+#' \code{\link{cvrisk.mboostLSS}} which are different for models with cyclic or noncyclic fitting.  
+#' @param papply (parallel) apply function, defaults to \code{\link{mclapply}}, 
+#' see \code{\link{cvrisk.mboostLSS}} for details.  
 #' @param trace print status information during cross-validation? Defaults to \code{TRUE}.
 #' @param fun if \code{fun} is \code{NULL}, the out-of-sample risk is returned. 
 #' \code{fun}, as a function of \code{object}, 
 #' may extract any other characteristic of the cross-validated models. These are returned as is.
-#' @param ... additional arguments passed to \code{\link[parallel]{mclapply}}.
+#' @param ... additional arguments passed to \code{\link{mclapply}}.
 #' 
 #' @details The function \code{cvrisk.FDboostLSS} is a wrapper for 
-#' \code{\link[gamboostLSS:cvrisk.mboostLSS]{cvrisk.mboostLSS}} in 
-#' package \code{gamboostLSS}.  
+#' \code{cvrisk.mboostLSS} in package \code{gamboostLSS}.  
 #' It overrides the default for the folds, so that the folds are sampled on the level of curves 
 #' (not on the level of single observations, which does not make sense for functional response).  
 #' 
 #' @return An object of class \code{cvriskLSS} (when \code{fun} was not specified), 
 #' basically a matrix containing estimates of the empirical risk for a varying number 
 #' of bootstrap iterations. \code{plot} and \code{print} methods are available as well as an 
-#' \code{mstop} method, see \code{\link[gamboostLSS:cvrisk.mboostLSS]{cvrisk.mboostLSS}}.
+#' \code{mstop} method, see \code{\link{cvrisk.mboostLSS}}.
 #' 
-#' @seealso \code{\link[gamboostLSS:cvrisk.mboostLSS]{cvrisk.mboostLSS}} in 
+#' @seealso \code{\link{cvrisk.mboostLSS}} in 
 #' package \code{gamboostLSS}. 
 #' 
 #' @export

R/crossvalidation.R

@@ -10,8 +10,8 @@
 #' @param showProgress logical, defaults to \code{TRUE}.
 #' @param compress logical, defaults to \code{FALSE}. Only used to force a meaningful
 #' behaviour of \code{applyFolds} with hmatrix objects when using nested resampling.
-#' @param papply (parallel) apply function, defaults to \code{\link[parallel]{mclapply}}, 
-#' see \code{\link[mboost]{cvrisk}} for details.  
+#' @param papply (parallel) apply function, defaults to \code{\link{mclapply}} from 
+#' R package \code{parallel}, see \code{\link[mboost]{cvrisk}} for details.  
 #' @param fun if \code{fun} is \code{NULL}, the out-of-bag risk is returned. 
 #' \code{fun}, as a function of \code{object}, 
 #' may extract any other characteristic of the cross-validated models. These are returned as is.
@@ -23,8 +23,8 @@
 #' @param numInt only exists in \code{applyFolds}; the scheme for numerical integration, 
 #' see \code{numInt} in \code{\link{FDboost}}. 
 #' @param mc.preschedule Defaults to \code{FALSE}. Preschedule tasks if they are parallelized using \code{mclapply}.   
-#' For details see \code{\link[parallel]{mclapply}}. 
-#' @param ... further arguments passed to \code{\link[parallel]{mclapply}} 
+#' For details see \code{\link{mclapply}}. 
+#' @param ... further arguments passed to the (parallel) apply function. 
 #' 
 #' @param id the id-vector as integers 1, 2, ... specifying which observations belong to the same curve, 
 #' deprecated in \code{cvMa()}.