setup.py

"""A setuptools based setup module.

See:
https://packaging.python.org/guides/distributing-packages-using-setuptools/
"""

import setuptools.command.build_py
# Always prefer setuptools over distutils
from setuptools import setup, find_packages
from os import path
import subprocess

here = path.abspath(path.dirname(__file__))

# Get the long description from the README file
with open(path.join(here, 'README.md'), encoding='utf-8') as f:
    long_description = f.read()

# Get the requirements from the requirements.txt file
with open(path.join(here, "requirements.txt"), encoding='utf-8') as f:
    requirements = [l_ for l_ in f.read().splitlines() if
                    not l_.startswith('#') and len(l_) > 0 and not l_.startswith('http')]

with open(path.join(here, "requirements.txt"), encoding='utf-8') as f:
    dependency_links = [l_ for l_ in f.read().splitlines() if l_.startswith('http')]

# Arguments marked as "Required" below must be included for upload to PyPI.
# Fields marked as "Optional" may be commented out.

setup(
    # This is the name of your project. The first time you publish this
    # package, this name will be registered for you. It will determine how
    # users can install this project, e.g.:
    #
    # $ pip install hop_etl
    #
    # And where it will live on PyPI: https://pypi.org/project/drs_downloader/
    #
    # There are some restrictions on what makes a valid project name
    # specification here:
    # https://packaging.python.org/specifications/core-metadata/#name
    name='iceberg_tools',  # Required

    # Versions should comply with PEP 440:
    # https://packaging.python.org/en/latest/single_source_version.html
    version='0.0.8rc2',  # Required

    # This is a one-line description or tagline of what your project does. This
    # corresponds to the "Summary" metadata field:
    # https://packaging.python.org/specifications/core-metadata/#summary
    description='FHIR schemas tools for bioinformatics.',
    # Optional

    # This field corresponds to the "Description" metadata field:
    # https://packaging.python.org/specifications/core-metadata/#description-optional
    long_description=long_description,  # Optional

    # Denotes that our long_description is in Markdown
    long_description_content_type='text/markdown',  # Optional (see note above)

    # Project's main homepage.
    url='https://github.com/bmeg/iceberg-schema-tools',  # Optional

    # This should be your name or the name of the organization which owns the
    # project.
    author='https://ellrottlab.org/',  # Optional


    # For a list of valid classifiers, see https://pypi.org/classifiers/
    classifiers=[  # Optional
        # How mature is this project? Common values are
        #   3 - Alpha
        #   4 - Beta
        #   5 - Production/Stable
        'Development Status :: 3 - Alpha',

        'Intended Audience :: Developers',
        'Topic :: Software Development :: Build Tools',

        'License :: OSI Approved :: MIT License',

        # Specify the Python versions you support here.
        'Programming Language :: Python :: 3.9',
    ],

    # This field adds keywords for your project which will appear on the
    # project page. What does your project relate to?
    #
    # Note that this is a string of words separated by whitespace, not a list.
    keywords='FHIR PFB gen3 bioinformatics graph',  # Optional

    # You can just specify package directories manually here if your project is
    # simple. Or you can use find_packages().

    packages=find_packages(exclude=['contrib', 'docs', 'tests']),  # Required

    # Specify which Python versions you support. In contrast to the
    # 'Programming Language' classifiers above, 'pip install' will check this
    # and refuse to install the project if the version does not match. If you
    # do not support Python 2, you can simplify this to '>=3.5' or similar, see
    # https://packaging.python.org/guides/distributing-packages-using-setuptools/#python-requires
    python_requires='>=3.9, <4',

    # This field lists other packages that your project depends on to run.
    # Any package you put here will be installed by pip when your project is
    # installed, so they must be valid existing projects.
    #
    # For an analysis of "install_requires" vs pip's requirements files see:
    # https://packaging.python.org/en/latest/requirements.html
    install_requires=requirements,

    # If there are data files included in your packages that need to be
    # installed, specify them here.
    #
    package_data={  # Optional
        '': ['*.yaml'],
    },

    # To provide executable scripts, use entry points in preference to the
    # "scripts" keyword. Entry points provide cross-platform support and allow
    # `pip` to create the appropriate form of executable for the target
    # platform.

    entry_points={
        'console_scripts': [
            'iceberg = iceberg_tools.cli:cli',
            'pfb_fhir = iceberg_tools.cli:cli'
        ],
    },

    include_package_data=True,

    # List additional URLs that are relevant to your project as a dict.
    #
    # This field corresponds to the "Project-URL" metadata fields:
    # https://packaging.python.org/specifications/core-metadata/#project-url-multiple-use
    #
    # Examples listed include a pattern for specifying where the package tracks
    # issues, where the source is hosted, where to say thanks to the package
    # maintainers, and where to support the project financially. The key is
    # what's used to render the link text on PyPI.
    project_urls={  # Optional
        'Bug Reports': 'https://github.com/bmeg/iceberg-schema-tools/issues',
        'Source': 'https://github.com/bmeg/iceberg-schema-tools',
    },
)