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Commits on Nov 8, 2021

• version changed to 1.0.1

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• use Reline if possible, and need to require reline or readline

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• need to require bio/shell/version

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• remove gem lines to require bio-shell and bio

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• update dependency versions according to GitHub Dependabot alerts

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Commits on Jun 14, 2019

• version changed to 1.0.0

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• Change supporting BioRuby version to 2.0.0

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Commits on Jun 13, 2019

• Bug fix: printf format syntax error about single percent character

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Commits on Sep 15, 2017

• fix url

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• fix typo and modify description in README.md

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• remove custom gem server settings coming from "bundle gem" template

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• Add fles for packaging independent bio-shell gem

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• modify gem lines to split bio-shell gem

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• disable (comment out) functional test

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Commits on Sep 14, 2017

• not to load deleted file lib/bio/shell/plugin/soap.rb

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• deleted lib/bio/shell/plugin/soap.rb

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• delete obsolete $Id:$ line

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• suppress warning: instance variable @mode not initialized

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• delete obsolete $Id:$ line

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• change deprecated method File.exists? to File.exist?

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• delete obsolete $Id:$ line

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• change deprecated method File.exists? to File.exist?

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• delete obsolete $Id:$ line

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• change deprecated method File.exists? to File.exist?

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• delete obsolete $Id:$ line

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• change deprecated method File.exists? to File.exist?

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• delete obsolete $Id:$ line

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• Bug fix: Ruby 1.9 support: did not yield the last part of the string

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• Remove ddbjsoap method that uses Bio::DDBJ::XML

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• Remove KEGG API plugin of BioRuby Shell, due to the removal of Bio::KEGG::API.

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• Remove Bio::Shell#ncbisoap which uses removed Bio::NCBI::SOAP.

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• Bug fix: bin/bioruby failed to save object

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• BIORUBY_TEST_LIB is always added on the top of $LOAD_PATH

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• New env BIORUBY_TEST_GEM and BIORUBY_TEST_LIB behavior changed

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• test/runner.rb: Run tests only in test/unit and test/functional.

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