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Add prefix gtdb #1239

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ialarmedalien opened this issue Oct 31, 2024 · 1 comment · Fixed by #1242
Closed

Add prefix gtdb #1239

ialarmedalien opened this issue Oct 31, 2024 · 1 comment · Fixed by #1242
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New Used in combination with prefix, metaprefix, or collection for new entries Prefix

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@ialarmedalien
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Prefix

gtdb

Name

Genome Taxonomy Database

Homepage

https://gtdb.ecogenomic.org

Source Code Repository

No response

Description

The Genome Taxonomy Database (GTDB) is an initiative to establish a standardised microbial taxonomy based on genome phylogeny.

License

CC-BY-SA-4.0

Publications

doi:10.1093/nar/gkab776|doi:10.1038/s41564-021-00918-8|doi:10.1038/s41587-020-0501-8|doi:10.1038/nbt.4229

Example Local Unique Identifier

g__Prochlorococcus_A

Regular Expression Pattern for Local Unique Identifier

^[cdfgops]__\w+\S+$

URI Format String

https://gtdb.ecogenomic.org/tree?r=$1

Wikidata Property

No response

Contributor Name

AJ Ireland

Contributor GitHub

ialarmedalien

Contributor ORCiD

0000-0003-1982-9065

Contributor Email

No response

Contact Name

Donovan Parks

Contact ORCiD

0000-0001-6662-9010

Contact GitHub

No response

Contact Email

No response

Additional Comments

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@ialarmedalien ialarmedalien added New Used in combination with prefix, metaprefix, or collection for new entries Prefix labels Oct 31, 2024
@cthoyt cthoyt closed this as completed in 6374569 Nov 2, 2024
@cthoyt
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cthoyt commented Nov 2, 2024

thanks @ialarmedalien! your new record is merge in PR #1242. It'll be up with the next weekly re-deploy of the Bioregistry

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