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Commits on Jul 8, 2019

• Make Docker instructions a top-level section

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• Add text about CWL wrapper

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• Remove programming language from Docker container name

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• Merge pull request #7 from TMiguelT/master

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• Make exit status a sub-section

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• Add comment about double use of the word bionitio in docker usage

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• Add text about running test-suite in Docker container

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• Add text about running Docker container

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• Add text about using Docker

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• Use $ in command line examples

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• Add more information about the automated test script

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Commits on Jul 5, 2019

• Hacks to get docker working; a change to the C# to work on read-only file systems like cwltool

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• Use correct docker image name

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• Add CWL file

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• Remove some csproj properties

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• Use /bionitio install dir

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• Update travis.yaml to use Docker

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• Working docker image

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Commits on Jul 4, 2019

• Docker fixes

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• Correct csproj directories

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• Add Dockerfile

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Commits on Jun 24, 2019

• Remove exit code 3

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Commits on May 3, 2019

• Improve wording of logging section

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• Remove fixme in logging section

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Commits on Apr 29, 2019

• Update multi-file usage example to use different file inputs

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Commits on Nov 25, 2018

• Removed section on error handling

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Commits on Jul 31, 2018

• Use placeholders in module header comments

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Commits on Apr 29, 2018

• update readmes

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• errors.md file added

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• updated install section with generic start

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• updated errors section

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Commits on Mar 19, 2018

• Update the functional tests submodule to the latest version

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• Remove some redundancy in the README.md template

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Commits on Feb 12, 2018

• Use template for README.md

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Commits on Feb 6, 2018

• Remove rule in .gitignore which caused fasta files to be ignored by git - this causes trouble when we make a new project using the bootstrap script. It means the fasta files are not included in the…

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