Supported formats
| Format | SeqBuddy | AlignBuddy | PhyloBuddy |
|---|---|---|---|
| Clustal | R & W† | R & W | None |
| EMBL‡ | R & W | R† & W | None |
| FASTA | R & W | R† & W | None |
| GenBank‡ | R & W | R† & W | None |
| Nexus | R & W† | R & W | R & W |
| Nexus-interleaved | R & W† | R & W | None |
| Nexus-sequential | R & W† | R & W | None |
| Newick | None | None | R & W |
| NeXML | None | None | R & W |
| PHYLIP (interleaved) | R & W† | R & W | None |
| PHYLIP (sequential) | R & W† | R & W | None |
| SeqXML | R & W | None | None |
| Stockholm | R & W† | R & W | None |
| Swissprot‡ | R only | None | None |
†All sequences must be the same length
‡Supports rich sequence annotation
These can all be passed in with the -o/--out_format flag
- gb
- phylipr (relaxed)
- phylipi (interleaved)
- phylips (sequential)
- phylipis (interleaved-strict)
- phylipss (sequential-strict)
- nexusi (interleaved)
- nexuss (sequential)
