Commits

Commits on Nov 21, 2015

Commits on Jul 1, 2015

Merge pull request #10 from bioinform/fix-vcf-insertion-svlen
Marghoob Mohiyuddin
committed
Report all fields from GFF in VCF
Marghoob Mohiyuddin
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report svlen in vcf for insertions
Marghoob Mohiyuddin
committed

Commits on Jun 8, 2015

bump version to 2.1-alpha
Marghoob Mohiyuddin
committed
Merge pull request #9 from bioinform/fix-final-vcf-reporting
Marghoob Mohiyuddin
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raise exception
Marghoob Mohiyuddin
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check for empty breakpoint libs
Marghoob Mohiyuddin
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resolve paths completely before comparison
Marghoob Mohiyuddin
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shutils -> shutil
Marghoob Mohiyuddin
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fix missing import
Marghoob Mohiyuddin
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fix wrong parentheses
Marghoob Mohiyuddin
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small edit
Marghoob Mohiyuddin
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log time spent
Marghoob Mohiyuddin
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also log chromosome
Marghoob Mohiyuddin
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import os
Marghoob Mohiyuddin
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fix syntax error
Marghoob Mohiyuddin
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Log command-line
Marghoob Mohiyuddin
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Commits on Jun 4, 2015

Fail if .ins file missing for the .gff
Marghoob Mohiyuddin
committed

Commits on May 13, 2015

copy and build bwa index if non-existent
Marghoob Mohiyuddin
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only consider specified chromosomes
Marghoob Mohiyuddin
committed

Commits on Apr 7, 2015

Merge branch 'master' of github.com:bioinform/breakseq2
Marghoob Mohiyuddin
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update github.io link
Marghoob Mohiyuddin
committed