biodiversitycellatlas/bca_preprocessing: Documentation

The biodiversitycellatlas/bca_preprocessing documentation is split into the following pages:

• Installation External Pipelines

  • Instructions on how to download and prepare external pipelines which are (optionally) run simultaniously with the biodiversitycellatlas/bca_preprocessing pipeline for validation purposes.

• Configuration Parameters

  • An overview of the different parameters a user can use within their configuration files.

• Usage

  • Explenation of how the pipeline works, how to run it and a description of the command-line flags.

• Output

  • An overview of the various files & results produced by the pipeline and how to interpret them.