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Refactor into a proper Spark extension

Status: Open.

#181 In biodatageeks/sequila;

· mwiewior opened on Nov 10, 2024

Run benchmarks

Status: Open.

#138 In biodatageeks/sequila;

· mwiewior opened on Nov 25, 2021

 ·  

Grand finale

Update Readme.md

documentationImprovements or additions to documentationImprovements or additions to documentation

enhancementNew feature or requestNew feature or request

Status: Open.

#137 In biodatageeks/sequila;

· mwiewior opened on Nov 25, 2021

 ·  

Grand finale

Different phred encoding

enhancementNew feature or requestNew feature or request

Status: Open.

#133 In biodatageeks/sequila;

· mwiewior opened on Nov 23, 2021

Migrate CI/CD to github actions

enhancementNew feature or requestNew feature or request

Status: Open.

#128 In biodatageeks/sequila;

· mwiewior opened on Nov 21, 2021

Coverage performance tuning

enhancementNew feature or requestNew feature or request

performance

Status: Open.

#117 In biodatageeks/sequila;

· mwiewior opened on Nov 16, 2021

Investiate how to optimize CRAM index access without using reference if only contig and positions needed

enhancementNew feature or requestNew feature or request

performance

questionFurther information is requestedFurther information is requested

Status: Open.

#114 In biodatageeks/sequila;

· mwiewior opened on Nov 15, 2021

unify config passing (field in contig agg?)

Status: Open.

#84 In biodatageeks/sequila;

· agaszmurlo opened on Oct 15, 2021

Add error handling for missing path for readBam

Status: Open.

#73 In biodatageeks/sequila;

· mwiewior opened on May 7, 2021

Add support for oap

enhancementNew feature or requestNew feature or request

Status: Open.

#68 In biodatageeks/sequila;

· mwiewior opened on Apr 6, 2021

Interval joins not working with partitioned tables

Status: Open.

#63 In biodatageeks/sequila;

· mwiewior opened on Mar 15, 2021

Issue with sequila running in JL lab env

bugSomething isn't workingSomething isn't working

Status: Open.

#55 In biodatageeks/sequila;

· mwiewior opened on Jan 31, 2021