docker-compose.yml

version: "3.9"
services:
  biochatter-next:
    build:
      context: ./
      dockerfile: Dockerfile
    ports:
      - 3000:3000
    env_file:
      - .env
    volumes:
      - ./tmp:/tmp
      - ./config:/config
    environment:
      - BASE_URL=http://flask-app:5001
      - CUSTOM_BIOCHATTER_NEXT_FILE=/config/biochatter-next.yaml
    depends_on:
      - flask-app
 
  flask-app:
    container_name: biochatter-server
    image: biocypher/biochatter-server:0.5.1
    env_file:
      - .bioserver.env
    ports:
      - 5001:5001
    volumes:
      - ./logs:/app/logs
      - ./tmp:/tmp
    environment:
      - HOST=standalone
      - PORT=19530
      - KGHOST=biocypher
      - KGPORT=7687
    depends_on:
      - "standalone"
      - "biocypher"

  etcd:
    container_name: milvus-etcd
    image: quay.io/coreos/etcd:v3.5.5
    environment:
      - ETCD_AUTO_COMPACTION_MODE=revision
      - ETCD_AUTO_COMPACTION_RETENTION=1000
      - ETCD_QUOTA_BACKEND_BYTES=4294967296
      - ETCD_SNAPSHOT_COUNT=50000
    volumes:
      - ${DOCKER_VOLUME_DIRECTORY:-.}/volumes/etcd:/etcd
    command: etcd -advertise-client-urls=http://127.0.0.1:2379 -listen-client-urls http://0.0.0.0:2379 --data-dir /etcd

  minio:
    container_name: milvus-minio
    image: minio/minio:RELEASE.2022-03-17T06-34-49Z
    environment:
      MINIO_ACCESS_KEY: minioadmin
      MINIO_SECRET_KEY: minioadmin
    volumes:
      - ${DOCKER_VOLUME_DIRECTORY:-.}/volumes/minio:/minio_data
    command: minio server /minio_data
    healthcheck:
      test: ["CMD", "curl", "-f", "http://localhost:9000/minio/health/live"]
      interval: 30s
      timeout: 20s
      retries: 3

  standalone:
    container_name: milvus-standalone
    image: milvusdb/milvus:v2.2.8
    command: ["milvus", "run", "standalone"]
    environment:
      ETCD_ENDPOINTS: etcd:2379
      MINIO_ADDRESS: minio:9000
    volumes:
      - ${DOCKER_VOLUME_DIRECTORY:-.}/volumes/milvus:/var/lib/milvus
    ports:
      - "19530:19530"
      - "9091:9091"
    depends_on:
      - "etcd"
      - "minio"

  biocypher:
    container_name: biocypher
    image: biocypher/neo4j-pole:0.1.0
    environment:
      NEO4J_dbms_security_auth__enabled: "false"
      NEO4J_dbms_databases_default__to__read__only: "false"
      NEO4J_ACCEPT_LICENSE_AGREEMENT: "yes"
    ports:
      - "0.0.0.0:7474:7474"
      - "0.0.0.0:7687:7687"


networks:
  default:
    name: biochat